Expression of SELENOK in liver cancer - The Human Protein Atlas

LIVER HEPATOCELLULAR CARCINOMA (TCGA) - Interactive survival scatter plotⁱ

The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.

The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".

Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.

Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.

& Survival analysisⁱ

SELENOK is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)

Stage:

Survival analysis

Current cut offⁱ :

Best expression cut offⁱ : 38.4

Median expressionⁱ : N/A

Median follow up timeⁱ : N/A

P scoreⁱ N/A

5-year survival highⁱ N/A

5-year survival lowⁱ N/A

TCGA RNA samplesⁱ

Average pTPM

37.4

Number of samples

362

Samples

Sample	Description	pTPM
TCGA-BC-A3KG-01A	68 years, female, white, stage:Stage II, alive, 680 days	93.6
TCGA-DD-A4NH-01A	65 years, female, white, stage:Stage IIIB, alive, 917 days	92.0
TCGA-DD-AAD8-01A	73 years, female, asian, stage:Stage I, alive, 1219 days	86.4
TCGA-DD-AADF-01A	64 years, female, asian, stage:Stage I, dead, 115 days	85.9
TCGA-BC-A216-01A	62 years, female, white, stage:Stage IIIA, alive, 1351 days	85.0
TCGA-CC-A5UD-01A	45 years, male, asian, stage:Stage IIIA, dead, 304 days	81.5
TCGA-DD-A4NV-01A	61 years, male, white, stage:Stage IIIA, alive, 2398 days	79.1
TCGA-G3-A25S-01A	64 years, male, white, stage:Stage I, dead, 416 days	75.0
TCGA-G3-A25Y-01A	52 years, female, asian, stage:Stage I, dead, 452 days	72.8
TCGA-MI-A75G-01A	63 years, male, white, stage:Stage II, alive, 698 days	72.8
TCGA-CC-A3M9-01A	45 years, male, asian, stage:Stage IIIA, dead, 300 days	71.9
TCGA-G3-A25X-01A	73 years, male, asian, stage:Stage II, alive, 1779 days	71.8
TCGA-FV-A2QR-01A	75 years, male, white, stage:Stage I, dead, 581 days	67.3
TCGA-FV-A496-01A	84 years, female, white, stage:Stage I, alive, 10 days	66.6
TCGA-PD-A5DF-01A	58 years, female, white, stage:Stage IIIB, dead, 639 days	65.3
TCGA-DD-A3A1-01A	65 years, male, stage:Stage IIIA, dead, 233 days	65.2
TCGA-G3-A5SK-01A	58 years, male, white, stage:Stage I, alive, 744 days	63.3
TCGA-FV-A3R2-01A	75 years, male, white, stage:Stage I, dead, 194 days	63.1
TCGA-RC-A7S9-01A	47 years, female, asian, stage:Stage I, alive, 640 days	62.5
TCGA-DD-A119-01A	40 years, male, asian, stage:Stage IV, dead, 223 days	60.9
TCGA-CC-A1HT-01A	50 years, male, asian, stage:Stage IIIA, dead, 101 days	60.5
TCGA-WX-AA44-01A	64 years, female, white, stage:Stage I, alive, 615 days	60.4
TCGA-DD-AADU-01A	60 years, male, asian, stage:Stage II, alive, 554 days	59.8
TCGA-G3-AAV7-01A	38 years, male, asian, stage:Stage II, alive, 361 days	58.6
TCGA-RC-A7SH-01A	42 years, male, asian, stage:Stage II, alive, 468 days	57.1
TCGA-XR-A8TG-01A	58 years, male, white, stage:Stage I, alive, 898 days	57.1
TCGA-QA-A7B7-01A	48 years, male, black or african american, stage:Stage II, alive, 94 days	56.8
TCGA-DD-AACF-01A	68 years, male, asian, stage:Stage I, dead, 365 days	56.5
TCGA-ED-A7PY-01A	20 years, female, asian, stage:Stage II, alive, 390 days	56.3
TCGA-DD-A1EC-01A	20 years, female, white, stage:Stage I, alive, 602 days	56.1
TCGA-CC-A8HS-01A	18 years, male, asian, stage:Stage IIIC, dead, 300 days	56.1
TCGA-DD-AAD6-01A	66 years, male, asian, stage:Stage IIIA, alive, 672 days	56.0
TCGA-CC-5264-01A	71 years, male, asian, stage:Stage IIIA, dead, 102 days	55.8
TCGA-BC-A5W4-01A	69 years, male, white, stage:Stage IIIA, dead, 547 days	55.6
TCGA-5R-AA1C-01A	57 years, male, white, stage:Stage II, alive, 520 days	55.2
TCGA-YA-A8S7-01A	68 years, male, white, stage:Stage IIIA, dead, 412 days	55.2
TCGA-DD-A3A5-01A	66 years, female, white, stage:Stage III, dead, 3125 days	54.4
TCGA-G3-A25U-01A	63 years, female, asian, stage:Stage I, alive, 1636 days	54.3
TCGA-DD-AAED-01A	51 years, male, asian, stage:Stage I, alive, 763 days	53.5
TCGA-BC-A10Y-01A	76 years, male, white, stage:'--, dead, 711 days	53.3
TCGA-DD-AACU-01A	59 years, male, asian, stage:Stage I, alive, 1567 days	53.1
TCGA-CC-A8HT-01A	74 years, male, asian, stage:Stage IIIA, dead, 140 days	53.1
TCGA-DD-AAE6-01A	59 years, female, asian, stage:Stage I, alive, 141 days	52.6
TCGA-2Y-A9H9-01A	70 years, male, white, stage:Stage I, alive, 697 days	52.2
TCGA-GJ-A6C0-01A	75 years, female, white, stage:Stage II, dead, 31 days	52.1
TCGA-G3-AAV2-01A	50 years, male, white, stage:Stage I, alive, 372 days	52.0
TCGA-G3-AAV0-01A	58 years, male, asian, stage:Stage I, alive, 476 days	51.7
TCGA-G3-A5SJ-01A	59 years, male, white, stage:Stage I, alive, 698 days	51.7
TCGA-ED-A7XP-01A	53 years, female, asian, stage:Stage II, alive, 400 days	51.6
TCGA-DD-A1EL-01A	23 years, male, black or african american, stage:Stage II, dead, 415 days	51.5
TCGA-G3-A25Z-01A	58 years, male, asian, stage:Stage I, alive, 655 days	51.2
TCGA-DD-AAE9-01A	69 years, male, asian, stage:Stage I, alive, 722 days	51.1
TCGA-DD-AADQ-01A	59 years, male, asian, stage:Stage II, alive, 436 days	50.9
TCGA-ED-A459-01A	47 years, male, asian, stage:Stage II, alive, 910 days	50.7
TCGA-DD-A3A6-01A	72 years, female, white, stage:Stage II, dead, 3258 days	50.2
TCGA-DD-AADI-01A	43 years, female, asian, stage:Stage I, alive, 1085 days	49.7
TCGA-ZS-A9CF-01A	64 years, male, white, stage:Stage II, alive, 2412 days	49.4
TCGA-DD-AAD5-01A	54 years, male, asian, stage:Stage I, alive, 1345 days	49.2
TCGA-DD-AAE4-01A	49 years, female, asian, stage:Stage I, alive, 608 days	49.2
TCGA-DD-AAVV-01A	56 years, male, asian, stage:Stage II, alive, 2455 days	49.1
TCGA-UB-A7MF-01A	56 years, male, white, stage:Stage IIIA, dead, 214 days	49.1
TCGA-G3-A5SI-01A	44 years, male, asian, stage:Stage II, dead, 768 days	49.0
TCGA-DD-AAVP-01A	48 years, male, asian, stage:Stage I, alive, 2752 days	48.9
TCGA-BC-A217-01A	75 years, female, white, stage:Stage II, dead, 1397 days	48.8
TCGA-BC-A69H-01A	64 years, male, white, stage:Stage II, alive, 444 days	48.7
TCGA-BC-A10U-01A	69 years, male, white, stage:'--, dead, 837 days	48.6
TCGA-RC-A7SB-01A	53 years, male, asian, stage:Stage II, alive, 588 days	48.6
TCGA-MI-A75I-01A	61 years, male, black or african american, stage:'--, alive, 630 days	48.5
TCGA-DD-A1EJ-01A	71 years, female, white, stage:Stage IIIC, dead, 1005 days	48.4
TCGA-BC-A10Z-01A	62 years, female, white, stage:Stage I, dead, 34 days	48.4
TCGA-NI-A4U2-01A	71 years, male, white, stage:Stage IIIA, dead, 1791 days	48.3
TCGA-CC-A7IG-01A	47 years, male, asian, stage:Stage II, dead, 299 days	48.2
TCGA-ZP-A9CV-01A	59 years, male, white, stage:'--, dead, 1088 days	48.2
TCGA-CC-A7IJ-01A	56 years, male, asian, stage:Stage II, alive, 382 days	47.9
TCGA-DD-A116-01A	68 years, male, asian, stage:Stage IIIA, dead, 1622 days	47.7
TCGA-BC-A69I-01A	69 years, male, white, stage:Stage I, alive, 387 days	47.6
TCGA-BW-A5NO-01A	50 years, male, black or african american, stage:Stage IIIA, alive, 20 days	47.6
TCGA-DD-A73E-01A	66 years, male, white, stage:Stage I, alive, 44 days	47.0
TCGA-DD-AACB-01A	74 years, female, asian, stage:Stage I, alive, 2324 days	46.6
TCGA-FV-A4ZQ-01A	52 years, male, white, stage:Stage I, alive, 12 days	46.4
TCGA-DD-A3A7-01A	67 years, male, stage:Stage IIIB, dead, 419 days	46.0
TCGA-DD-AACC-01A	61 years, male, asian, stage:Stage I, dead, 1685 days	45.9
TCGA-CC-A8HU-01A	39 years, female, asian, stage:Stage IIIA, dead, 344 days	45.7
TCGA-BC-A3KF-01A	66 years, female, white, stage:Stage I, alive, 8 days	45.7
TCGA-DD-A4NB-01A	25 years, male, white, stage:Stage I, alive, 989 days	45.5
TCGA-G3-A7M9-01A	70 years, male, white, stage:Stage IIIB, dead, 56 days	45.4
TCGA-DD-A39Y-01A	67 years, male, asian, stage:Stage I, dead, 171 days	45.0
TCGA-DD-A114-01A	42 years, male, black or african american, stage:Stage II, dead, 1149 days	44.8
TCGA-CC-5261-01A	44 years, male, asian, stage:Stage II, dead, 97 days	44.7
TCGA-G3-AAUZ-01A	48 years, male, stage:Stage I, alive, 480 days	44.7
TCGA-WQ-AB4B-01A	62 years, male, white, stage:Stage II, alive, 395 days	44.7
TCGA-DD-AACI-01A	69 years, male, asian, stage:Stage II, alive, 1618 days	44.5
TCGA-DD-AAVR-01A	44 years, male, asian, stage:Stage I, alive, 2513 days	44.3
TCGA-DD-AACG-01A	52 years, male, asian, stage:Stage II, dead, 469 days	44.3
TCGA-DD-AACS-01A	39 years, male, asian, stage:Stage I, alive, 1804 days	44.1
TCGA-DD-AACQ-01A	50 years, male, asian, stage:Stage II, dead, 432 days	43.6
TCGA-UB-A7MB-01A	24 years, male, white, stage:Stage II, alive, 601 days	43.2
TCGA-DD-A4NQ-01A	60 years, male, white, stage:Stage II, dead, 373 days	43.2
TCGA-K7-A6G5-01A	66 years, male, white, stage:Stage I, alive, 512 days	42.9
TCGA-DD-AADP-01A	45 years, male, asian, stage:Stage I, alive, 458 days	42.8
TCGA-DD-AAC8-01A	72 years, male, asian, stage:Stage I, dead, 16 days	42.8
TCGA-4R-AA8I-01A	66 years, male, white, stage:Stage II, dead, 262 days	42.6
TCGA-DD-AADM-01A	58 years, male, asian, stage:Stage II, dead, 12 days	42.6
TCGA-ZP-A9D2-01A	51 years, male, white, stage:'--, dead, 765 days	42.5
TCGA-2Y-A9GS-01A	58 years, male, white, stage:'--, dead, 724 days	42.5
TCGA-DD-A1EG-01A	76 years, male, white, stage:Stage I, dead, 1372 days	42.3
TCGA-DD-A11C-01A	69 years, male, white, stage:Stage I, alive, 662 days	42.1
TCGA-DD-A39Z-01A	43 years, female, stage:Stage II, dead, 601 days	41.9
TCGA-G3-A3CK-01A	61 years, male, asian, stage:Stage I, alive, 585 days	41.8
TCGA-G3-AAV4-01A	83 years, female, white, stage:Stage I, dead, 27 days	41.8
TCGA-DD-AADB-01A	51 years, male, asian, stage:Stage I, alive, 1242 days	41.5
TCGA-2Y-A9GY-01A	64 years, female, white, stage:Stage II, dead, 757 days	41.4
TCGA-CC-A5UC-01A	63 years, male, asian, stage:Stage IIIA, dead, 347 days	41.4
TCGA-ZP-A9CZ-01A	72 years, male, asian, stage:'--, alive, 706 days	41.0
TCGA-K7-AAU7-01A	61 years, male, white, stage:Stage II, alive, 359 days	40.7
TCGA-DD-AADL-01A	58 years, male, asian, stage:Stage I, alive, 636 days	40.5
TCGA-DD-AADY-01A	55 years, female, asian, stage:Stage I, alive, 555 days	40.5
TCGA-DD-A4NS-01A	61 years, female, white, stage:Stage I, dead, 2456 days	40.5
TCGA-5C-A9VH-01A	70 years, male, white, stage:Stage I, alive, 322 days	40.2
TCGA-DD-A4NE-01A	75 years, female, white, stage:Stage IIIA, dead, 660 days	40.0
TCGA-EP-A3RK-01A	73 years, male, white, stage:Stage IIIA, alive, 363 days	39.9
TCGA-BC-A10W-01A	50 years, male, asian, stage:'--, dead, 91 days	39.9
TCGA-FV-A495-01A	51 years, female, white, stage:Stage II, alive, 1 days	39.9
TCGA-XR-A8TC-01A	43 years, female, white, stage:Stage I, alive, 1339 days	39.8
TCGA-DD-AADV-01A	50 years, male, asian, stage:Stage I, alive, 574 days	39.8
TCGA-CC-A5UE-01A	48 years, male, asian, stage:Stage IIIB, dead, 272 days	39.8
TCGA-DD-A3A4-01A	37 years, male, white, stage:Stage IIIA, dead, 612 days	39.7
TCGA-EP-A2KC-01A	62 years, male, black or african american, stage:Stage I, dead, 19 days	39.6
TCGA-CC-A3MC-01A	54 years, male, asian, stage:Stage IIIA, alive, 363 days	39.4
TCGA-2Y-A9GT-01A	51 years, male, white, stage:Stage I, dead, 1624 days	39.2
TCGA-DD-AAEA-01A	65 years, male, asian, stage:Stage I, alive, 575 days	39.2
TCGA-CC-A3MB-01A	36 years, male, asian, stage:Stage IIIA, dead, 315 days	38.8
TCGA-CC-A8HV-01A	51 years, female, asian, stage:Stage II, dead, 279 days	38.7
TCGA-EP-A26S-01A	70 years, male, white, stage:Stage I, alive, 608 days	38.7
TCGA-BD-A2L6-01A	69 years, male, white, stage:'--, alive, 1363 days	38.6
TCGA-CC-5259-01A	60 years, female, asian, stage:Stage IIIC, alive, 250 days	38.5
TCGA-CC-5262-01A	67 years, male, asian, stage:Stage IIIC, dead, 103 days	38.4
TCGA-DD-AACH-01A	69 years, male, asian, stage:Stage II, dead, 195 days	38.4
TCGA-DD-AACL-01A	66 years, female, asian, stage:Stage I, dead, 107 days	38.4
TCGA-G3-A7M6-01A	60 years, female, white, stage:Stage I, alive, 632 days	38.4
TCGA-G3-A3CH-01A	53 years, male, asian, stage:Stage IIIA, alive, 780 days	38.3
TCGA-DD-AAE3-01A	50 years, male, asian, stage:Stage I, alive, 566 days	38.3
TCGA-FV-A2QQ-01A	80 years, male, white, stage:Stage I, alive, 729 days	38.0
TCGA-ED-A627-01A	74 years, male, white, stage:Stage I, alive, 423 days	37.9
TCGA-MI-A75H-01A	77 years, male, white, stage:'--, alive, 747 days	37.8
TCGA-DD-A4NN-01A	56 years, female, white, stage:Stage I, dead, 899 days	37.8
TCGA-DD-AAEE-01A	55 years, male, asian, stage:Stage I, alive, 810 days	37.5
TCGA-DD-AAEG-01A	59 years, female, asian, stage:Stage I, alive, 719 days	37.5
TCGA-2Y-A9H0-01A	49 years, male, white, stage:Stage IIIA, alive, 3675 days	37.5
TCGA-DD-AACJ-01A	75 years, male, asian, stage:Stage II, alive, 2102 days	37.4
TCGA-DD-A11B-01A	73 years, male, white, stage:Stage I, dead, 14 days	37.4
TCGA-ED-A5KG-01A	60 years, female, asian, stage:Stage II, alive, 854 days	37.3
TCGA-ZS-A9CD-01A	73 years, male, white, stage:Stage II, dead, 1386 days	37.2
TCGA-DD-A73B-01A	72 years, female, white, stage:Stage I, dead, 283 days	37.1
TCGA-G3-A3CJ-01A	52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days	36.9
TCGA-CC-A7IL-01A	61 years, male, asian, stage:Stage IIIA, dead, 278 days	36.7
TCGA-DD-A39X-01A	78 years, female, white, stage:Stage I, dead, 1694 days	36.5
TCGA-NI-A8LF-01A	74 years, male, white, stage:Stage I, alive, 799 days	36.4
TCGA-G3-A6UC-01A	65 years, male, white, stage:Stage IIIB, alive, 671 days	36.2
TCGA-XR-A8TD-01A	49 years, female, white, stage:Stage IIIB, alive, 1030 days	36.1
TCGA-DD-A4NF-01A	72 years, male, white, stage:Stage I, alive, 942 days	36.1
TCGA-DD-A73A-01A	71 years, male, white, stage:Stage I, alive, 728 days	36.1
TCGA-DD-AAE2-01A	51 years, male, asian, stage:Stage I, alive, 638 days	36.0
TCGA-BD-A3EP-01A	75 years, female, black or african american, stage:Stage I, alive, 409 days	36.0
TCGA-DD-A1EI-01A	46 years, male, asian, stage:Stage I, alive, 183 days	35.7
TCGA-WQ-A9G7-01A	71 years, female, white, stage:'--, alive, 30 days	35.6
TCGA-DD-A73D-01A	68 years, female, white, stage:Stage II, alive, 693 days	35.5
TCGA-ED-A8O6-01A	50 years, female, asian, stage:Stage IIIA, dead, 56 days	35.5
TCGA-DD-A3A9-01A	64 years, female, white, stage:Stage IVB, dead, 931 days	35.5
TCGA-GJ-A3OU-01A	59 years, male, white, stage:Stage I, alive, 879 days	35.5
TCGA-FV-A3I1-01A	81 years, female, white, stage:Stage II, dead, 247 days	35.4
TCGA-DD-A4NP-01A	32 years, male, white, stage:Stage I, alive, 3308 days	35.1
TCGA-BC-A8YO-01A	66 years, female, white, stage:Stage IIIC, alive, 562 days	35.0
TCGA-XR-A8TF-01A	74 years, male, white, stage:Stage I, dead, 693 days	35.0
TCGA-CC-A7IK-01A	59 years, male, asian, stage:Stage IIIA, dead, 262 days	35.0
TCGA-EP-A2KA-01A	52 years, female, white, stage:Stage IIIA, dead, 627 days	35.0
TCGA-DD-A3A8-01A	75 years, male, white, stage:Stage II, dead, 11 days	35.0
TCGA-DD-AACV-01A	53 years, male, asian, stage:Stage I, alive, 1531 days	34.9
TCGA-DD-A4NO-01A	65 years, male, white, stage:Stage I, alive, 2245 days	34.9
TCGA-K7-A5RG-01A	66 years, male, black or african american, stage:Stage I, alive, 519 days	34.9
TCGA-DD-AAVS-01A	56 years, male, asian, stage:Stage I, alive, 1823 days	34.8
TCGA-DD-AADR-01A	58 years, male, asian, stage:Stage I, alive, 2028 days	34.8
TCGA-DD-A4NJ-01A	54 years, female, white, stage:Stage II, alive, 928 days	34.8
TCGA-KR-A7K8-01A	57 years, male, stage:Stage I, alive, 906 days	34.7
TCGA-HP-A5N0-01A	90 years, female, stage:'--, dead, 752 days	34.7
TCGA-EP-A3JL-01A	76 years, male, white, stage:Stage I, alive, 303 days	34.5
TCGA-XR-A8TE-01A	16 years, male, white, stage:Stage IIIA, alive, 925 days	34.5
TCGA-DD-A1EE-01A	73 years, male, white, stage:Stage IIIA, dead, 349 days	34.3
TCGA-WX-AA47-01A	33 years, female, white, stage:Stage IIIA, dead, 556 days	34.3
TCGA-ED-A7PZ-01A	61 years, male, asian, stage:Stage II, alive, 6 days	34.2
TCGA-2Y-A9H4-01A	68 years, male, black or african american, stage:Stage I, alive, 1452 days	34.2
TCGA-RG-A7D4-01A	69 years, male, black or african american, stage:Stage II, alive, 1098 days	34.1
TCGA-DD-A1EB-01A	72 years, female, stage:Stage I, alive, 2017 days	34.0
TCGA-MI-A75C-01A	64 years, male, white, stage:Stage I, alive, 291 days	33.9
TCGA-DD-AADN-01A	59 years, male, asian, stage:Stage I, alive, 898 days	33.9
TCGA-2Y-A9HA-01A	70 years, male, white, stage:Stage II, dead, 36 days	33.5
TCGA-DD-A73F-01A	77 years, female, white, stage:Stage I, alive, 1085 days	33.5
TCGA-T1-A6J8-01A	68 years, male, white, stage:'--, alive, 23 days	33.2
TCGA-DD-AACK-01A	70 years, male, asian, stage:Stage I, alive, 9 days	33.2
TCGA-DD-A39V-01A	77 years, male, white, stage:Stage II, dead, 643 days	33.2
TCGA-DD-AAVZ-01A	38 years, male, asian, stage:Stage I, alive, 1900 days	33.1
TCGA-G3-A7M8-01A	31 years, male, asian, stage:Stage I, alive, 430 days	33.1
TCGA-DD-AACN-01A	32 years, male, asian, stage:Stage I, alive, 1302 days	33.1
TCGA-5R-AA1D-01A	17 years, female, white, stage:Stage IIIA, alive, 449 days	33.0
TCGA-DD-AAVW-01A	35 years, male, asian, stage:Stage I, alive, 2317 days	33.0
TCGA-FV-A23B-01A	70 years, female, white, stage:Stage II, dead, 1852 days	32.9
TCGA-LG-A9QD-01A	68 years, male, white, stage:Stage IIIA, alive, 366 days	32.8
TCGA-G3-A25T-01A	45 years, female, white, stage:Stage IIIA, alive, 1553 days	32.8
TCGA-G3-A25V-01A	68 years, male, white, stage:Stage I, alive, 860 days	32.8
TCGA-CC-A7IH-01A	58 years, male, asian, stage:Stage IIIA, alive, 365 days	32.7
TCGA-ES-A2HT-01A	54 years, male, black or african american, stage:Stage I, dead, 438 days	32.6
TCGA-GJ-A9DB-01A	68 years, male, white, stage:Stage I, dead, 67 days	32.5
TCGA-LG-A6GG-01A	79 years, female, white, stage:Stage II, alive, 387 days	32.4
TCGA-FV-A3I0-01A	76 years, female, white, stage:Stage II, alive, 848 days	32.3
TCGA-UB-A7ME-01A	51 years, male, asian, stage:Stage I, alive, 486 days	32.2
TCGA-DD-A4ND-01A	56 years, female, white, stage:Stage I, alive, 2746 days	32.2
TCGA-DD-AADD-01A	51 years, male, asian, stage:Stage I, alive, 1231 days	32.1
TCGA-DD-AAC9-01A	51 years, male, asian, stage:Stage I, alive, 347 days	32.0
TCGA-DD-AAEH-01A	73 years, male, asian, stage:Stage I, alive, 784 days	32.0
TCGA-CC-5258-01A	48 years, male, asian, stage:Stage II, dead, 129 days	31.8
TCGA-G3-A3CG-01A	80 years, male, white, stage:Stage I, alive, 673 days	31.7
TCGA-DD-AAW2-01A	69 years, male, asian, stage:Stage I, alive, 1855 days	31.5
TCGA-DD-AADA-01A	66 years, female, asian, stage:Stage I, alive, 1233 days	31.5
TCGA-DD-AAE0-01A	45 years, female, asian, stage:Stage IIIA, alive, 555 days	31.5
TCGA-ED-A97K-01A	54 years, male, asian, stage:Stage IIIA, alive, 6 days	31.5
TCGA-DD-AAD0-01A	73 years, female, asian, stage:Stage I, alive, 137 days	31.5
TCGA-ED-A7PX-01A	48 years, female, asian, stage:Stage II, alive, 6 days	31.5
TCGA-DD-AADW-01A	48 years, male, asian, stage:Stage I, alive, 587 days	31.4
TCGA-CC-A9FS-01A	55 years, male, asian, stage:Stage II, alive, 211 days	31.4
TCGA-DD-AADC-01A	53 years, male, asian, stage:Stage I, dead, 425 days	31.3
TCGA-2Y-A9GX-01A	68 years, male, white, stage:Stage I, alive, 2442 days	31.2
TCGA-ZS-A9CG-01A	55 years, male, white, stage:Stage II, alive, 341 days	31.1
TCGA-ZP-A9D1-01A	56 years, female, white, stage:'--, alive, 21 days	31.0
TCGA-UB-A7MA-01A	62 years, female, white, stage:Stage II, alive, 848 days	30.9
TCGA-DD-A3A3-01A	45 years, male, asian, stage:Stage I, dead, 535 days	30.8
TCGA-BC-A110-01A	51 years, female, black or african american, stage:'--, dead, 2116 days	30.8
TCGA-DD-AACZ-01A	63 years, female, asian, stage:Stage I, dead, 171 days	30.7
TCGA-5C-AAPD-01A	61 years, male, asian, stage:Stage II, alive, 20 days	30.7
TCGA-DD-AADK-01A	68 years, female, asian, stage:Stage II, alive, 1049 days	30.6
TCGA-DD-A115-01A	53 years, male, white, stage:Stage IIIA, dead, 2542 days	30.5
TCGA-G3-A7M7-01A	65 years, male, white, stage:Stage I, alive, 361 days	30.5
TCGA-DD-AAVQ-01A	38 years, male, asian, stage:Stage I, alive, 2728 days	30.4
TCGA-G3-A3CI-01A	71 years, male, white, stage:Stage I, alive, 180 days	30.2
TCGA-DD-A73C-01A	65 years, female, white, stage:Stage IIIA, alive, 701 days	30.1
TCGA-G3-AAV5-01A	67 years, male, white, stage:Stage II, alive, 354 days	30.1
TCGA-MI-A75E-01A	61 years, male, white, stage:Stage IIIC, alive, 507 days	30.0
TCGA-2Y-A9GW-01A	64 years, male, white, stage:Stage I, dead, 1271 days	29.9
TCGA-3K-AAZ8-01A	65 years, male, black or african american, stage:Stage IIIB, alive, 396 days	29.9
TCGA-K7-A5RF-01A	64 years, male, white, stage:Stage I, alive, 631 days	29.8
TCGA-DD-AACP-01A	64 years, male, asian, stage:Stage I, alive, 415 days	29.6
TCGA-CC-A7IF-01A	59 years, male, asian, stage:Stage IIIA, dead, 649 days	29.5
TCGA-5C-A9VG-01A	58 years, male, white, stage:Stage II, alive, 328 days	29.4
TCGA-KR-A7K2-01A	64 years, male, white, stage:Stage I, alive, 829 days	29.4
TCGA-DD-AACD-01A	48 years, male, asian, stage:Stage I, dead, 381 days	29.4
TCGA-DD-AADG-01A	70 years, male, asian, stage:Stage IIIA, alive, 1145 days	29.3
TCGA-2Y-A9GV-01A	54 years, female, white, stage:Stage I, dead, 2532 days	29.3
TCGA-G3-A5SM-01A	58 years, male, white, stage:Stage II, alive, 520 days	29.3
TCGA-G3-AAV3-01A	58 years, female, white, stage:Stage II, alive, 412 days	29.2
TCGA-CC-A123-01A	24 years, female, asian, stage:Stage IIIA, alive, 219 days	29.1
TCGA-DD-AAVY-01A	56 years, male, asian, stage:Stage IIIA, alive, 1970 days	29.1
TCGA-KR-A7K0-01A	65 years, male, white, stage:Stage I, dead, 65 days	28.9
TCGA-ES-A2HS-01A	80 years, male, white, stage:Stage I, dead, 688 days	28.9
TCGA-DD-AADJ-01A	70 years, female, asian, stage:Stage I, alive, 1066 days	28.9
TCGA-G3-A5SL-01A	70 years, male, white, stage:Stage II, alive, 621 days	28.7
TCGA-ZP-A9CY-01A	66 years, female, white, stage:'--, alive, 782 days	28.7
TCGA-DD-A1ED-01A	68 years, male, white, stage:Stage I, alive, 2301 days	28.6
TCGA-DD-AAW0-01A	54 years, male, asian, stage:Stage I, alive, 2015 days	28.4
TCGA-DD-AACX-01A	66 years, male, asian, stage:Stage II, alive, 170 days	28.3
TCGA-DD-AAW3-01A	69 years, male, asian, stage:Stage I, alive, 1633 days	28.1
TCGA-DD-AAW1-01A	55 years, male, asian, stage:Stage IIIA, alive, 1989 days	28.1
TCGA-WJ-A86L-01A	68 years, female, white, stage:Stage I, alive, 345 days	28.0
TCGA-DD-AAEB-01A	60 years, male, asian, stage:Stage I, alive, 478 days	28.0
TCGA-ED-A66X-01A	35 years, male, asian, stage:Stage IIIA, alive, 406 days	28.0
TCGA-DD-A3A2-01A	76 years, female, white, stage:Stage I, dead, 2131 days	28.0
TCGA-BC-A10T-01A	76 years, male, white, stage:'--, dead, 837 days	27.6
TCGA-DD-A11D-01A	57 years, female, white, stage:Stage I, dead, 1560 days	27.6
TCGA-DD-A1EH-01A	23 years, male, white, stage:Stage III, alive, 1495 days	27.4
TCGA-MR-A520-01A	58 years, male, white, stage:Stage I, alive, 229 days	27.4
TCGA-O8-A75V-01A	54 years, male, stage:Stage I, alive, 538 days	27.2
TCGA-ED-A82E-01A	60 years, female, asian, stage:Stage IIIA, alive, 408 days	27.2
TCGA-DD-AACT-01A	69 years, female, asian, stage:Stage I, alive, 1562 days	27.0
TCGA-G3-AAV6-01A	53 years, female, white, stage:Stage IIIA, dead, 65 days	26.9
TCGA-HP-A5MZ-01A	78 years, male, stage:Stage I, dead, 91 days	26.9
TCGA-UB-A7MD-01A	67 years, male, black or african american, stage:Stage I, dead, 52 days	26.8
TCGA-MR-A8JO-01A	34 years, male, white, stage:Stage I, alive, 330 days	26.7
TCGA-CC-A3MA-01A	61 years, male, asian, stage:Stage IIIA, dead, 303 days	26.7
TCGA-G3-AAV1-01A	51 years, male, asian, stage:Stage IIIC, dead, 359 days	26.6
TCGA-UB-AA0U-01A	60 years, male, white, stage:Stage II, alive, 327 days	26.5
TCGA-DD-A4NA-01A	67 years, female, white, stage:Stage IIIC, alive, 1008 days	26.4
TCGA-BC-A10R-01A	66 years, female, white, stage:'--, dead, 308 days	26.3
TCGA-BC-A112-01A	80 years, male, white, stage:'--, dead, 153 days	26.3
TCGA-UB-AA0V-01A	69 years, female, white, stage:Stage I, alive, 314 days	26.0
TCGA-DD-AACE-01A	62 years, male, asian, stage:Stage I, alive, 2184 days	25.9
TCGA-2Y-A9H3-01A	45 years, male, white, stage:Stage II, alive, 1516 days	25.8
TCGA-RC-A7SF-01A	66 years, male, asian, stage:Stage I, alive, 579 days	25.8
TCGA-DD-AACA-01A	65 years, male, asian, stage:Stage I, alive, 2301 days	25.8
TCGA-BD-A3ER-01A	62 years, male, white, stage:Stage II, alive, 1115 days	25.7
TCGA-DD-A1EK-01A	64 years, female, white, stage:Stage IVB, dead, 558 days	25.7
TCGA-DD-AAVU-01A	46 years, male, asian, stage:Stage II, alive, 2202 days	25.6
TCGA-DD-AACY-01A	61 years, male, asian, stage:Stage I, alive, 1450 days	25.6
TCGA-CC-A7IE-01A	57 years, male, asian, stage:Stage IIIA, dead, 217 days	25.6
TCGA-DD-AACO-01A	40 years, male, asian, stage:Stage I, alive, 1876 days	25.6
TCGA-5R-AAAM-01A	65 years, female, white, stage:Stage II, dead, 46 days	25.5
TCGA-ED-A7XO-01A	29 years, male, asian, stage:Stage IIIA, alive, 427 days	25.5
TCGA-CC-A7II-01A	54 years, male, asian, stage:Stage IIIA, alive, 399 days	25.2
TCGA-2Y-A9HB-01A	66 years, male, stage:Stage I, alive, 260 days	25.2
TCGA-WX-AA46-01A	61 years, male, white, stage:Stage II, alive, 756 days	25.1
TCGA-DD-AAE7-01A	72 years, male, asian, stage:Stage I, alive, 644 days	25.0
TCGA-KR-A7K7-01A	61 years, female, white, stage:Stage II, alive, 951 days	25.0
TCGA-UB-A7MC-01A	59 years, male, white, stage:Stage IIIA, alive, 500 days	24.9
TCGA-FV-A4ZP-01A	78 years, male, white, stage:Stage IIIA, dead, 2486 days	24.7
TCGA-DD-A4NL-01A	46 years, male, white, stage:Stage I, alive, 1711 days	24.7
TCGA-DD-AAD2-01A	66 years, male, asian, stage:Stage I, alive, 658 days	24.6
TCGA-DD-A4NI-01A	67 years, male, white, stage:Stage II, alive, 816 days	24.5
TCGA-BC-A10S-01A	81 years, male, white, stage:'--, dead, 1423 days	24.5
TCGA-DD-AACW-01A	43 years, male, asian, stage:Stage I, alive, 1424 days	24.3
TCGA-2Y-A9H7-01A	81 years, female, white, stage:Stage I, alive, 1168 days	24.2
TCGA-DD-AAD3-01A	43 years, male, asian, stage:Stage I, alive, 1295 days	24.1
TCGA-DD-A39W-01A	29 years, female, white, stage:Stage III, dead, 827 days	24.0
TCGA-DD-AAD1-01A	51 years, female, asian, stage:Stage I, alive, 564 days	23.9
TCGA-CC-A9FW-01A	68 years, male, asian, stage:Stage IIIA, alive, 248 days	23.7
TCGA-RC-A6M5-01A	20 years, female, white, stage:Stage IVA, alive, 15 days	23.6
TCGA-DD-A4NR-01A	85 years, female, white, stage:Stage I, dead, 9 days	23.4
TCGA-CC-5263-01A	35 years, male, asian, stage:Stage IIIA, dead, 129 days	23.4
TCGA-ED-A4XI-01A	58 years, male, asian, stage:Stage II, alive, 819 days	23.3
TCGA-DD-AA3A-01A	81 years, female, white, stage:Stage I, dead, 410 days	23.0
TCGA-EP-A12J-01A	62 years, male, black or african american, stage:Stage I, alive, 570 days	22.9
TCGA-G3-A7M5-01A	76 years, male, asian, stage:Stage I, alive, 447 days	22.9
TCGA-RC-A7SK-01A	59 years, male, asian, stage:Stage I, alive, 472 days	22.9
TCGA-ZP-A9D4-01A	64 years, female, white, stage:'--, alive, 395 days	22.8
TCGA-ZS-A9CE-01A	79 years, female, white, stage:Stage II, alive, 1241 days	22.6
TCGA-DD-AAEK-01A	51 years, male, asian, stage:Stage II, alive, 1067 days	22.4
TCGA-DD-A1EA-01A	68 years, male, asian, stage:Stage II, alive, 2415 days	22.4
TCGA-BC-A10Q-01A	72 years, female, white, stage:'--, dead, 1135 days	22.3
TCGA-DD-AAE1-01A	52 years, male, asian, stage:Stage I, alive, 552 days	22.1
TCGA-2Y-A9H2-01A	64 years, female, white, stage:Stage I, alive, 1731 days	22.1
TCGA-BC-A10X-01A	52 years, female, white, stage:Stage IIIA, dead, 770 days	21.8
TCGA-DD-A4NK-01A	80 years, female, white, stage:Stage IIIA, dead, 1210 days	21.8
TCGA-DD-AAVX-01A	38 years, male, asian, stage:Stage II, alive, 1718 days	21.7
TCGA-EP-A2KB-01A	46 years, female, white, stage:Stage I, dead, 596 days	21.5
TCGA-2Y-A9GZ-01A	82 years, female, white, stage:Stage II, dead, 848 days	21.3
TCGA-DD-AADO-01A	55 years, male, asian, stage:Stage I, alive, 453 days	21.2
TCGA-ED-A8O5-01A	59 years, female, asian, stage:Stage IIIA, alive, 406 days	21.0
TCGA-2Y-A9H1-01A	58 years, male, white, stage:Stage I, dead, 1229 days	20.8
TCGA-2Y-A9H5-01A	59 years, female, white, stage:Stage I, dead, 555 days	20.5
TCGA-RC-A6M4-01A	74 years, female, white, stage:Stage IIIA, alive, 22 days	20.3
TCGA-DD-A118-01A	77 years, female, white, stage:Stage II, alive, 3437 days	20.3
TCGA-DD-A4NG-01A	77 years, male, white, stage:Stage IIIA, dead, 802 days	19.9
TCGA-DD-A73G-01A	73 years, female, white, stage:Stage I, alive, 3478 days	19.5
TCGA-DD-A1EF-01A	57 years, female, white, stage:Stage I, dead, 394 days	19.4
TCGA-DD-AADS-01A	63 years, male, asian, stage:Stage I, alive, 474 days	19.1
TCGA-DD-AAEI-01A	72 years, male, asian, stage:Stage I, alive, 1531 days	19.1
TCGA-LG-A9QC-01A	48 years, male, white, stage:Stage I, alive, 425 days	18.9
TCGA-ED-A66Y-01A	51 years, female, asian, stage:Stage IIIA, dead, 296 days	18.8
TCGA-2Y-A9H8-01A	85 years, female, white, stage:'--, dead, 633 days	18.6
TCGA-DD-A113-01A	55 years, female, white, stage:Stage II, alive, 2425 days	18.2
TCGA-2Y-A9GU-01A	55 years, female, white, stage:Stage I, alive, 1939 days	18.0
TCGA-CC-5260-01A	61 years, female, asian, stage:Stage IIIC, dead, 87 days	17.7
TCGA-RC-A6M6-01A	75 years, male, white, stage:Stage II, alive, 9 days	17.5
TCGA-2Y-A9H6-01A	68 years, female, white, stage:Stage I, alive, 357 days	16.6
TCGA-FV-A3R3-01A	38 years, female, white, stage:Stage I, dead, 366 days	14.5
TCGA-ZP-A9D0-01A	67 years, female, black or african american, stage:'--, alive, 1091 days	12.7
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LIVER HEPATOCELLULAR CARCINOMA (VALIDATION) - Interactive survival scatter plotⁱ The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red. The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off". Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation. Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient. & Survival analysisⁱ Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.

LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)

Number of samples

330

Samples

Sample ID	Sample type	nRPX
211	Tumor	1.5
395	Tumor	1.3
697	Tumor	1.2
937	Tumor	1.1
615	Tumor	1.0
535	Tumor	1.0
525	Tumor	1.0
724	Normal	0.9
965	Tumor	0.9
383	Tumor	0.9
963	Tumor	0.9
915	Tumor	0.9
1045	Tumor	0.9
957	Tumor	0.8
487	Tumor	0.8
524	Normal	0.7
385	Tumor	0.7
448	Normal	0.7
516	Normal	0.7
518	Normal	0.7
387	Tumor	0.7
327	Tumor	0.7
447	Tumor	0.6
983	Tumor	0.6
911	Tumor	0.6
878	Normal	0.6
331	Tumor	0.6
328	Normal	0.6
514	Normal	0.6
1015	Tumor	0.6
515	Tumor	0.6
277	Tumor	0.6
536	Normal	0.6
966	Normal	0.6
135	Tumor	0.5
351	Tumor	0.5
517	Tumor	0.5
1046	Normal	0.5
311	Tumor	0.5
628	Normal	0.5
271	Tumor	0.5
866	Normal	0.5
665	Tumor	0.5
573	Tumor	0.5
967	Tumor	0.5
384	Normal	0.5
818	Normal	0.5
223	Tumor	0.5
523	Tumor	0.5
483	Tumor	0.4
1042	Normal	0.4
861	Tumor	0.4
467	Tumor	0.4
867	Tumor	0.4
492	Normal	0.4
1028	Normal	0.4
368	Normal	0.4
661	Tumor	0.4
857	Tumor	0.4
393	Tumor	0.4
698	Normal	0.4
364	Normal	0.4
427	Tumor	0.4
741	Tumor	0.4
484	Normal	0.4
943	Tumor	0.4
1026	Normal	0.4
671	Tumor	0.4
286	Normal	0.4
526	Normal	0.4
341	Tumor	0.4
627	Tumor	0.4
367	Tumor	0.4
498	Normal	0.3
533	Tumor	0.3
231	Tumor	0.3
471	Tumor	0.3
375	Tumor	0.3
396	Normal	0.3
642	Normal	0.3
283	Tumor	0.3
917	Tumor	0.3
481	Tumor	0.3
647	Tumor	0.3
918	Normal	0.3
951	Tumor	0.3
1041	Tumor	0.3
1022	Normal	0.3
1016	Normal	0.3
817	Tumor	0.3
446	Normal	0.3
728	Normal	0.2
672	Normal	0.2
636	Normal	0.2
852	Normal	0.2
913	Tumor	0.2
558	Normal	0.2
721	Tumor	0.2
412	Normal	0.2
816	Normal	0.2
212	Normal	0.2
1044	Normal	0.2
434	Normal	0.2
284	Normal	0.2
964	Normal	0.2
1032	Normal	0.2
357	Tumor	0.2
616	Normal	0.2
722	Normal	0.2
546	Normal	0.2
727	Tumor	0.2
466	Normal	0.2
568	Normal	0.2
497	Tumor	0.2
465	Tumor	0.2
968	Normal	0.2
953	Tumor	0.2
618	Normal	0.2
981	Tumor	0.2
744	Normal	0.2
376	Normal	0.2
137	Tumor	0.2
132	Normal	0.2
455	Tumor	0.2
131	Tumor	0.2
944	Normal	0.2
228	Normal	0.2
171	Tumor	0.2
138	Normal	0.1
422	Normal	0.1
858	Normal	0.1
984	Normal	0.1
954	Normal	0.1
488	Normal	0.1
285	Tumor	0.1
411	Tumor	0.1
355	Tumor	0.1
662	Normal	0.1
148	Normal	0.1
714	Normal	0.1
864	Normal	0.1
545	Tumor	0.1
785	Tumor	0.1
366	Normal	0.1
824	Normal	0.1
982	Normal	0.1
161	Tumor	0.1
363	Tumor	0.1
464	Normal	0.1
922	Normal	0.1
938	Normal	0.1
356	Normal	0.1
685	Tumor	0.1
1014	Normal	0.1
862	Normal	0.1
268	Normal	0.1
494	Normal	0.1
362	Normal	0.1
563	Tumor	0.1
126	Normal	0.1
456	Normal	0.1
572	Normal	0.1
648	Normal	0.1
958	Normal	0.1
635	Tumor	0.1
537	Tumor	0.1
343	Tumor	0.1
975	Tumor	0.1
113	Tumor	0.1
127	Tumor	0.0
463	Tumor	0.0
567	Tumor	0.0
477	Tumor	0.0
474	Normal	0.0
882	Normal	0.0
146	Normal	0.0
527	Tumor	0.0
482	Normal	0.0
978	Normal	0.0
564	Normal	0.0
716	Normal	0.0
415	Tumor	0.0
222	Normal	0.0
142	Normal	0.0
214	Normal	0.0
258	Normal	0.0
777	Tumor	0.0
257	Tumor	0.0
192	Normal	0.0
737	Tumor	0.0
641	Tumor	0.0
617	Tumor	0.0
413	Tumor	0.0
262	Normal	0.0
574	Normal	0.0
478	Normal	0.0
956	Normal	0.0
365	Tumor	0.0
111	Normal	0.0
914	Normal	-0.1
916	Normal	-0.1
955	Tumor	-0.1
218	Normal	-0.1
786	Normal	-0.1
952	Normal	-0.1
554	Normal	-0.1
538	Normal	-0.1
426	Normal	-0.1
344	Normal	-0.1
696	Normal	-0.1
924	Normal	-0.1
868	Normal	-0.1
114	Normal	-0.1
686	Normal	-0.1
297	Tumor	-0.1
416	Normal	-0.1
1025	Tumor	-0.1
232	Normal	-0.1
814	Normal	-0.1
188	Normal	-0.1
664	Normal	-0.1
187	Tumor	-0.1
926	Normal	-0.1
491	Tumor	-0.1
823	Tumor	-0.1
436	Normal	-0.1
884	Normal	-0.1
196	Normal	-0.1
921	Tumor	-0.1
738	Normal	-0.1
513	Tumor	-0.1
386	Normal	-0.1
472	Normal	-0.1
352	Normal	-0.1
468	Normal	-0.1
452	Normal	-0.1
571	Tumor	-0.1
185	Tumor	-0.1
217	Tumor	-0.2
432	Normal	-0.2
445	Tumor	-0.2
1031	Tumor	-0.2
493	Tumor	-0.2
261	Tumor	-0.2
746	Normal	-0.2
125	Tumor	-0.2
227	Tumor	-0.2
278	Normal	-0.2
666	Normal	-0.2
813	Tumor	-0.2
528	Normal	-0.2
213	Tumor	-0.2
534	Normal	-0.2
361	Tumor	-0.2
425	Tumor	-0.2
428	Normal	-0.2
745	Tumor	-0.2
423	Tumor	-0.2
881	Tumor	-0.2
473	Tumor	-0.2
925	Tumor	-0.2
388	Normal	-0.2
851	Tumor	-0.2
353	Tumor	-0.2
224	Normal	-0.2
391	Tumor	-0.2
272	Normal	-0.2
553	Tumor	-0.2
723	Tumor	-0.2
298	Normal	-0.3
742	Normal	-0.3
128	Normal	-0.3
267	Tumor	-0.3
756	Normal	-0.3
977	Tumor	-0.3
874	Normal	-0.3
778	Normal	-0.3
354	Normal	-0.3
312	Normal	-0.3
755	Tumor	-0.3
1027	Tumor	-0.3
444	Normal	-0.3
191	Tumor	-0.3
461	Tumor	-0.3
923	Tumor	-0.3
124	Normal	-0.3
195	Tumor	-0.3
663	Tumor	-0.3
743	Tumor	-0.3
392	Normal	-0.3
451	Tumor	-0.4
342	Normal	-0.4
873	Tumor	-0.4
172	Normal	-0.4
424	Normal	-0.4
162	Normal	-0.4
815	Tumor	-0.4
421	Tumor	-0.4
1013	Tumor	-0.4
431	Tumor	-0.4
145	Tumor	-0.4
414	Normal	-0.4
912	Normal	-0.4
221	Tumor	-0.4
136	Normal	-0.4
1043	Tumor	-0.5
141	Tumor	-0.5
713	Tumor	-0.5
695	Tumor	-0.5
394	Normal	-0.5
332	Normal	-0.5
462	Normal	-0.5
433	Tumor	-0.5
313	Tumor	-0.6
1021	Tumor	-0.6
358	Normal	-0.6
112	Tumor	-0.6
557	Tumor	-0.6
123	Tumor	-0.6
314	Normal	-0.7
976	Normal	-0.7
147	Tumor	-0.7
865	Tumor	-0.7
715	Tumor	-0.8
883	Tumor	-0.8
435	Tumor	-0.8
186	Normal	-0.8
877	Tumor	-0.9
863	Tumor	-0.9
443	Tumor	-1.3
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LIVER CANCER - Protein expressionⁱ A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here. Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.

Antibody stainingⁱ Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.	Antibody HPA008196
Staining
High
Medium
Low
Not detected
Intensity
Strong
Moderate
Weak
Negative
Quantity
>75%
75%-25%
<25%
None
Location
Nuclear
Cytoplasmic/membranous
Cytoplasmic/membranous,nuclear
None
Cholangiocarcinoma
Carcinoma, Hepatocellular, NOS