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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
1086.0
nTPM
GTEx:
1086.0
nTPM
FANTOM5:
820.5
Scaled Tags Per Million
Pig:
1126.9
nTPM
Mouse:
15275.2
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA045393
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1086.0
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 1086.0
Samples: 105
Max nTPM: 2811.2
Min nTPM: 104.0
Std nTPM: 569.4
Median nTPM:
352_1
62 years, male
2811.2
319_1
81 years, male
2393.3
354_1
81 years, female
2314.2
218_1
71 years, female
2303.7
172_1
72 years, female
2172.8
163_1
78 years, male
2032.8
321_1
62 years, female
2028.5
425_1
59 years, female
1895.9
386_1
76 years, male
1857.5
356_1
87 years, female
1849.8
353_1
82 years, female
1796.9
350_1
84 years, female
1789.2
355_1
70 years, female
1694.1
349_1
83 years, male
1692.7
377_1
82 years, female
1685.7
243_1
75 years, male
1667.6
447_1
81 years, male
1637.6
376_1
75 years, female
1628.0
480_1
63 years, male
1625.6
394_1
75 years, female
1617.2
335_1
73 years, female
1602.9
286_1
68 years, female
1601.8
320_1
89 years, female
1580.3
292_1
71 years, male
1576.7
316_1
62 years, male
1571.1
6_1
73 years, female
1569.8
293_1
68 years, female
1568.1
318_1
68 years, male
1535.7
406_1
79 years, male
1534.9
503_1
68 years, male
1528.5
177_1
74 years, male
1408.8
404_1
82 years, female
1375.3
322_1
76 years, male
1355.2
229_1
69 years, female
1352.2
351_1
91 years, male
1346.6
251_1
78 years, male
1344.9
237_1
82 years, male
1340.7
379_1
60 years, male
1315.6
389_1
86 years, female
1297.7
189_1
76 years, male
1295.9
526_1
61 years, male
1291.0
405_1
91 years, male
1268.7
375_1
74 years, female
1254.1
246_1
77 years, male
1233.8
2_1
77 years, female
1191.4
517_1
88 years, male
1170.4
348_1
84 years, male
1121.4
317_1
60 years, male
1043.5
384_1
83 years, male
1038.7
291_1
76 years, male
1036.9
347_1
72 years, male
1023.7
295_1
61 years, female
1002.9
506_1
65 years, male
989.6
115_1
83 years, male
989.4
266_1
85 years, male
986.6
468_1
89 years, male
961.8
264_1
73 years, female
935.0
452_1
88 years, female
927.6
396_1
62 years, male
912.1
265_1
87 years, male
890.2
9_1
66 years, female
880.6
254_1
77 years, female
878.3
153_1
70 years, female
873.3
173_1
67 years, male
852.1
126_1
63 years, male
835.3
217_1
76 years, male
828.6
518_1
75 years, female
811.7
137_1
83 years, male
806.5
145_1
84 years, male
785.2
324_1
76 years, male
783.4
4_1
88 years, female
773.8
311_1
78 years, male
762.6
17_1
71 years, male
753.7
35_1
74 years, female
749.6
499_1
55 years, female
747.6
18_1
88 years, male
661.6
307_1
66 years, female
655.2
81_1
67 years, male
632.1
288_1
66 years, female
629.4
117_1
61 years, male
614.1
120_1
70 years, female
581.7
99_1
64 years, male
552.4
109_1
81 years, female
544.0
314_1
67 years, male
535.9
313_1
79 years, female
526.5
142_1
61 years, female
525.6
43_1
64 years, female
513.0
41_1
94 years, female
493.5
162_1
79 years, female
465.8
32_1
67 years, male
463.4
139_1
64 years, female
446.7
315_1
62 years, female
440.9
415_1
77 years, female
434.8
42_1
85 years, male
416.4
308_1
70 years, female
398.4
495_1
57 years, female
385.6
414_1
84 years, female
373.9
466_1
57 years, female
366.7
119_1
70 years, female
297.4
89_1
63 years, male
253.6
149_1
88 years, male
229.5
490_1
67 years, female
177.7
501_1
88 years, male
174.9
413_1
59 years, female
142.1
491_1
89 years, female
104.0
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
