MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.8 nTPM
HPA Brain:48.8 nTPM
GTEx:43.8 nTPM
FANTOM5:18.0 Scaled Tags Per Million
Mouse:82.6 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 48.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.2
2586 Male, age 75, left hemisphere 59.8
2666 Male, age 74, left hemisphere 45.3
1827 Male, age 72, unknown 44.5
2019 Male, age 18, unknown 42.1
2411 Female, age 72, unknown 39.9
2828 Female, age 72, unknown 37.9
2219 Male, age 76, both hemispheres 36.8
1870 Female, age 42, unknown 33.1
1833 Male, age 53, unknown 32.0
1830 Male, age 51, unknown 30.6
Dorsal raphe nucleus
nTPM: 39.3
1828 Male, age 53, unknown 43.8
2047 Male, age 72, unknown 43.0
2298 Female, age 72, unknown 42.6
2750 Male, age 76, both hemispheres 37.0
2016 Female, age 72, unknown 30.3
Inferior colliculus
nTPM: 36.5
2097 Female, age 72, unknown 40.9
1890 Male, age 53, unknown 37.8
1848 Female, age 42, unknown 34.6
2849 Male, age 72, unknown 32.8
Median raphe nucleus
nTPM: 38.6
2220 Male, age 76, midline 38.6
Periaquaductal grey, anterior
nTPM: 44.5
1947 Male, age 18, unknown 45.8
2502 Female, age 75, unknown 44.6
1795 Male, age 51, unknown 43.1
Periaquaductal grey, dorsal
nTPM: 32.9
1840 Male, age 53, unknown 35.4
2464 Female, age 72, unknown 32.5
2850 Male, age 76, both hemispheres 32.3
1831 Male, age 72, unknown 31.5
Periaquaductal grey, lateral
nTPM: 29.7
2053 Male, age 18, unknown 30.5
2140 Male, age 76, both hemispheres 29.3
2272 Male, age 74, both hemispheres 29.2
Pretectal area
nTPM: 40.5
1816 Male, age 51, unknown 53.5
2007 Male, age 72, unknown 52.7
1817 Female, age 42, unknown 50.6
1944 Female, age 72, unknown 48.1
1815 Male, age 53, unknown 43.8
2667 Female, age 75, unknown 39.9
2407 Male, age 75, both hemispheres 34.4
2825 Male, age 18, unknown 33.9
2224 Female, age 72, unknown 33.5
2273 Male, age 74, both hemispheres 29.7
2316 Male, age 76, right hemisphere 25.9
Red nucleus
nTPM: 39.0
1821 Female, age 72, unknown 46.1
2584 Male, age 75, left hemisphere 42.2
1954 Female, age 42, unknown 40.9
2785 Male, age 18, unknown 40.9
2588 Male, age 74, left hemisphere 39.8
2725 Female, age 75, unknown 38.6
2769 Male, age 72, unknown 38.2
2227 Male, age 72, unknown 37.8
1904 Male, age 53, unknown 37.3
2503 Female, age 72, unknown 36.6
1865 Male, age 51, unknown 36.3
2823 Male, age 76, right hemisphere 33.3
Substantia nigra
nTPM: 48.8
1916 Female, age 42, unknown 64.9
1851 Male, age 51, unknown 56.4
1941 Male, age 53, unknown 53.6
2665 Male, age 74, both hemispheres 53.4
1889 Female, age 72, unknown 48.8
2241 Male, age 72, unknown 47.8
2583 Male, age 75, right hemisphere 45.4
2699 Male, age 18, unknown 41.7
2409 Female, age 72, unknown 40.1
2590 Female, age 75, unknown 35.5
Superior colliculus
nTPM: 37.8
2668 Female, age 75, unknown 50.0
2664 Male, age 75, both hemispheres 46.2
2087 Female, age 72, unknown 42.7
2261 Male, age 18, unknown 42.2
1796 Male, age 53, unknown 39.1
1895 Male, age 76, right hemisphere 36.4
1839 Male, age 51, unknown 33.2
2587 Male, age 74, left hemisphere 32.7
1913 Female, age 42, unknown 28.8
1995 Male, age 72, unknown 27.2
Ventral tegmental area
nTPM: 43.1
2410 Female, age 72, unknown 52.2
1915 Female, age 42, unknown 50.9
2218 Male, age 76, both hemispheres 46.4
1942 Male, age 51, unknown 42.4
2021 Male, age 53, unknown 33.4
2223 Female, age 72, unknown 33.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.8
Samples: 139

Max nTPM: 91.9
Min nTPM: 20.4
Std nTPM: 14.9
Median nTPM: 40.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 91.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 91.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 90.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 85.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 78.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 77.1
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 76.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 71.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 70.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 68.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 67.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.0
FF:10158-103A5 76 years, female 18.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 82.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 82.6
Samples: 4

Max nTPM: 85.6
Min nTPM: 78.6
Sample A Male 84.0
Sample B Male 82.3
Sample C Female 78.6
Sample D Female 85.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71280727 Antisense, RP_050818_01_E03, Mouse strain C57BL/6J (56 days, male) 0.6

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