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SLC41A3
HPA
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  • SUMMARY

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  • SLC41A3
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC41A3
Synonyms FLJ20473
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 41 member 3
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 3
Cytoband
Chromosome location (bp) 126006357 - 126101561
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

15
Ensembl ENSG00000114544 (version 109)
Entrez gene 54946
HGNC HGNC:31046
UniProt Q96GZ6 (UniProt - Evidence at protein level)
neXtProt NX_Q96GZ6
GeneCards SLC41A3
Antibodypedia SLC41A3 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Na(+)/Mg(2+) ion exchanger that acts as a predominant Mg(2+) efflux system at the mitochondrial inner membrane.... show less
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Ion transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Magnesium
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable cation transmembrane transporter activity. Predicted to be involved in cation transmembrane transport. Located in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC41A3-201
ENSP00000326070
ENST00000315891
Q96GZ6
[Direct mapping] Solute carrier family 41 member 3
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0045016 [mitochondrial magnesium ion transmembrane transport]
GO:0061768 [magnesium:sodium antiporter activity]
Show all
507 aa
54.8 kDa
No >9
SLC41A3-202
ENSP00000264471
ENST00000346785
Q96GZ6
[Direct mapping] Solute carrier family 41 member 3
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0045016 [mitochondrial magnesium ion transmembrane transport]
GO:0061768 [magnesium:sodium antiporter activity]
Show all
471 aa
50.8 kDa
No >9
SLC41A3-203
ENSP00000353533
ENST00000360370
Q96GZ6
[Direct mapping] Solute carrier family 41 member 3
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0045016 [mitochondrial magnesium ion transmembrane transport]
GO:0061768 [magnesium:sodium antiporter activity]
Show all
487 aa
52.5 kDa
No >9
SLC41A3-204
ENSP00000373092
ENST00000383598
Q96GZ6
[Direct mapping] Solute carrier family 41 member 3
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0045016 [mitochondrial magnesium ion transmembrane transport]
GO:0061768 [magnesium:sodium antiporter activity]
Show all
461 aa
49.9 kDa
No >9
SLC41A3-205
ENSP00000421940
ENST00000504035
D6R9S7
[Direct mapping] Solute carrier family 41 member
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0098655 [cation transmembrane transport]
Show all
152 aa
16.4 kDa
No 1
SLC41A3-210
ENSP00000422531
ENST00000507280
D6R9S7
[Direct mapping] Solute carrier family 41 member
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0098655 [cation transmembrane transport]
Show all
152 aa
16.4 kDa
No 1
SLC41A3-211
ENSP00000427409
ENST00000508835
Q96GZ6
[Direct mapping] Solute carrier family 41 member 3
Show all
Transporters
   Transporter channels and pores
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   9TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005739 [mitochondrion]
GO:0005743 [mitochondrial inner membrane]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0035725 [sodium ion transmembrane transport]
GO:0045016 [mitochondrial magnesium ion transmembrane transport]
GO:0061768 [magnesium:sodium antiporter activity]
Show all
370 aa
39.8 kDa
No 9
SLC41A3-212
ENSP00000424882
ENST00000509064
D6RF72
[Direct mapping] Solute carrier family 41 member
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0098655 [cation transmembrane transport]
Show all
138 aa
14.9 kDa
No 1
SLC41A3-213
ENSP00000422150
ENST00000509452
D6R925
[Direct mapping] Solute carrier family 41 member
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0098655 [cation transmembrane transport]
Show all
85 aa
9 kDa
No 1
SLC41A3-214
ENSP00000423524
ENST00000510651
D6R9M9
[Direct mapping] Solute carrier family 41 member
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0098655 [cation transmembrane transport]
Show all
174 aa
18.5 kDa
No 2
SLC41A3-215
ENSP00000421008
ENST00000512470
D6RHE3
[Direct mapping] Solute carrier family 41 member
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0098655 [cation transmembrane transport]
Show all
201 aa
21.3 kDa
No 3
SLC41A3-218
ENSP00000425373
ENST00000513723
D6RDB0
[Direct mapping] Solute carrier family 41 member
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   4TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0098655 [cation transmembrane transport]
Show all
288 aa
30.5 kDa
No 4
SLC41A3-220
ENSP00000422458
ENST00000514333
D6RC02
[Direct mapping] Solute carrier family 41 member
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0098655 [cation transmembrane transport]
Show all
137 aa
14.5 kDa
No 2
SLC41A3-221
ENSP00000422828
ENST00000514677
D6R9X6
[Direct mapping] Solute carrier family 41 member
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0098655 [cation transmembrane transport]
Show all
294 aa
31.3 kDa
No 5
SLC41A3-222
ENSP00000423154
ENST00000514891
D6R9S7
[Direct mapping] Solute carrier family 41 member
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006812 [cation transport]
GO:0008324 [cation transmembrane transporter activity]
GO:0016020 [membrane]
GO:0022890 [inorganic cation transmembrane transporter activity]
GO:0030001 [metal ion transport]
GO:0098655 [cation transmembrane transport]
Show all
152 aa
16.4 kDa
No 1

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