MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.1 nTPM
HPA Brain:117.6 nTPM
GTEx:34.1 nTPM
FANTOM5:65.0 Scaled Tags Per Million
Pig:113.3 nTPM
Mouse:319.2 nTPM
Allen mouse:8.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 117.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.2
1827 Male, age 72, unknown 117.3
2411 Female, age 72, unknown 108.3
2219 Male, age 76, both hemispheres 96.7
1870 Female, age 42, unknown 90.8
2666 Male, age 74, left hemisphere 88.8
2586 Male, age 75, left hemisphere 82.3
1833 Male, age 53, unknown 81.1
2019 Male, age 18, unknown 80.2
2828 Female, age 72, unknown 75.5
1830 Male, age 51, unknown 71.4
Dorsal raphe nucleus
nTPM: 101.1
2298 Female, age 72, unknown 140.2
2047 Male, age 72, unknown 107.7
2750 Male, age 76, both hemispheres 92.8
1828 Male, age 53, unknown 92.0
2016 Female, age 72, unknown 72.7
Inferior colliculus
nTPM: 100.6
2097 Female, age 72, unknown 122.4
1848 Female, age 42, unknown 100.5
2849 Male, age 72, unknown 91.8
1890 Male, age 53, unknown 87.7
Median raphe nucleus
nTPM: 117.6
2220 Male, age 76, midline 117.6
Periaquaductal grey, anterior
nTPM: 106.1
1947 Male, age 18, unknown 116.2
2502 Female, age 75, unknown 107.3
1795 Male, age 51, unknown 94.9
Periaquaductal grey, dorsal
nTPM: 88.9
1840 Male, age 53, unknown 107.2
2464 Female, age 72, unknown 85.5
1831 Male, age 72, unknown 85.2
2850 Male, age 76, both hemispheres 77.7
Periaquaductal grey, lateral
nTPM: 83.3
2053 Male, age 18, unknown 88.3
2272 Male, age 74, both hemispheres 87.4
2140 Male, age 76, both hemispheres 74.2
Pretectal area
nTPM: 99.1
1816 Male, age 51, unknown 132.0
2007 Male, age 72, unknown 119.0
1944 Female, age 72, unknown 114.7
2224 Female, age 72, unknown 107.3
1817 Female, age 42, unknown 103.2
1815 Male, age 53, unknown 98.4
2667 Female, age 75, unknown 96.7
2825 Male, age 18, unknown 91.6
2273 Male, age 74, both hemispheres 83.5
2407 Male, age 75, both hemispheres 74.8
2316 Male, age 76, right hemisphere 69.1
Red nucleus
nTPM: 68.4
1821 Female, age 72, unknown 88.5
2725 Female, age 75, unknown 87.2
2584 Male, age 75, left hemisphere 76.2
2785 Male, age 18, unknown 69.5
1954 Female, age 42, unknown 68.4
2588 Male, age 74, left hemisphere 67.8
2227 Male, age 72, unknown 65.1
2769 Male, age 72, unknown 62.8
1865 Male, age 51, unknown 60.9
2503 Female, age 72, unknown 59.0
2823 Male, age 76, right hemisphere 58.0
1904 Male, age 53, unknown 57.3
Substantia nigra
nTPM: 110.5
1916 Female, age 42, unknown 156.9
1941 Male, age 53, unknown 149.5
2241 Male, age 72, unknown 133.5
1889 Female, age 72, unknown 121.6
1851 Male, age 51, unknown 118.1
2409 Female, age 72, unknown 104.1
2665 Male, age 74, both hemispheres 89.6
2699 Male, age 18, unknown 80.4
2583 Male, age 75, right hemisphere 75.5
2590 Female, age 75, unknown 75.5
Superior colliculus
nTPM: 85.5
2261 Male, age 18, unknown 107.9
1895 Male, age 76, right hemisphere 99.5
2087 Female, age 72, unknown 99.0
1839 Male, age 51, unknown 91.4
2664 Male, age 75, both hemispheres 91.0
2668 Female, age 75, unknown 90.8
1796 Male, age 53, unknown 90.5
2587 Male, age 74, left hemisphere 79.4
1913 Female, age 42, unknown 58.3
1995 Male, age 72, unknown 47.3
Ventral tegmental area
nTPM: 102.8
2218 Male, age 76, both hemispheres 121.6
1915 Female, age 42, unknown 117.8
2410 Female, age 72, unknown 114.6
1942 Male, age 51, unknown 94.4
2021 Male, age 53, unknown 85.2
2223 Female, age 72, unknown 83.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.1
Samples: 139

Max nTPM: 143.4
Min nTPM: 9.7
Std nTPM: 22.6
Median nTPM: 26.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 143.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 132.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 104.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 100.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 79.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 77.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 74.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 73.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 72.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 67.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 67.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 65.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.0
FF:10158-103A5 76 years, female 65.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 113.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 88.8
Samples: 4

Max nTPM: 131.4
Min nTPM: 37.3
Sample A Female 131.4
Sample B Female 68.4
Sample C Male 118.1
Sample D Male 37.3
Midbrain
nTPM: 102.6
Samples: 4

Max nTPM: 139.3
Min nTPM: 57.0
Sample A Female 57.0
Sample B Female 83.9
Sample C Male 139.3
Sample D Male 130.2
Periaqueductal gray
nTPM: 84.9
Samples: 3

Max nTPM: 106.0
Min nTPM: 71.2
Sample B Female 77.4
Sample C Male 106.0
Sample D Male 71.2
Superior colliculi
nTPM: 113.3
Samples: 4

Max nTPM: 139.1
Min nTPM: 74.8
Sample A Female 135.6
Sample B Female 74.8
Sample C Male 139.1
Sample D Male 103.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 319.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 319.2
Samples: 4

Max nTPM: 332.6
Min nTPM: 308.8
Sample A Male 308.8
Sample B Male 332.6
Sample C Female 320.9
Sample D Female 314.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.9
74641315 Antisense, RP_060220_02_E02, Mouse strain C57BL/6J (56 days, male) 9.6
68546392 Antisense, RP_050120_02_D08, Mouse strain C57BL/6J (56 days, male) 8.3

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