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CSPG5
HPA
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  • CSPG5
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CSPG5
Synonyms NGC
Gene descriptioni

Full gene name according to HGNC.

Chondroitin sulfate proteoglycan 5
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 3
Cytoband p21.31
Chromosome location (bp) 47562238 - 47580792
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000114646 (version 109)
Entrez gene 10675
HGNC HGNC:2467
UniProt O95196 (UniProt - Evidence at protein level)
neXtProt NX_O95196
GeneCards CSPG5
Antibodypedia CSPG5 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

May function as a growth and differentiation factor involved in neuritogenesis. May induce ERBB3 activation.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Developmental protein
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Differentiation, Growth regulation, Neurogenesis
Gene summary (Entrez)i

Useful information about the gene from Entrez

The protein encoded by this gene is a proteoglycan that may function as a neural growth and differentiation factor. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2011]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CSPG5-201
ENSP00000264723
ENST00000264723
O95196
[Direct mapping] Chondroitin sulfate proteoglycan 5
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005796 [Golgi lumen]
GO:0005886 [plasma membrane]
GO:0007010 [cytoskeleton organization]
GO:0007165 [signal transduction]
GO:0007399 [nervous system development]
GO:0008083 [growth factor activity]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0030154 [cell differentiation]
GO:0030660 [Golgi-associated vesicle membrane]
GO:0031103 [axon regeneration]
GO:0043202 [lysosomal lumen]
GO:0045202 [synapse]
GO:0045211 [postsynaptic membrane]
GO:0046907 [intracellular transport]
GO:0048858 [cell projection morphogenesis]
GO:0050804 [modulation of chemical synaptic transmission]
GO:0097060 [synaptic membrane]
GO:0098978 [glutamatergic synapse]
GO:0098982 [GABA-ergic synapse]
GO:0099550 [trans-synaptic signaling, modulating synaptic transmission]
GO:0106091 [glial cell projection elongation]
GO:1900026 [positive regulation of substrate adhesion-dependent cell spreading]
GO:2000300 [regulation of synaptic vesicle exocytosis]
Show all
539 aa
57 kDa
Yes 1
CSPG5-202
ENSP00000373244
ENST00000383738
O95196
[Direct mapping] Chondroitin sulfate proteoglycan 5
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005796 [Golgi lumen]
GO:0005886 [plasma membrane]
GO:0007010 [cytoskeleton organization]
GO:0007165 [signal transduction]
GO:0007399 [nervous system development]
GO:0008083 [growth factor activity]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0030154 [cell differentiation]
GO:0030660 [Golgi-associated vesicle membrane]
GO:0043202 [lysosomal lumen]
GO:0045202 [synapse]
GO:0046907 [intracellular transport]
GO:0048858 [cell projection morphogenesis]
GO:0097060 [synaptic membrane]
GO:0099550 [trans-synaptic signaling, modulating synaptic transmission]
GO:0106091 [glial cell projection elongation]
GO:1900026 [positive regulation of substrate adhesion-dependent cell spreading]
Show all
566 aa
60 kDa
Yes 1
CSPG5-203
ENSP00000392096
ENST00000456150
O95196
[Direct mapping] Chondroitin sulfate proteoglycan 5
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Mapped to neXtProt
   neXtProt - Evidence at protein level
   DeepTMHMM predicted membrane proteins
Show all
GO:0000139 [Golgi membrane]
GO:0005515 [protein binding]
GO:0005576 [extracellular region]
GO:0005783 [endoplasmic reticulum]
GO:0005789 [endoplasmic reticulum membrane]
GO:0005794 [Golgi apparatus]
GO:0005796 [Golgi lumen]
GO:0005886 [plasma membrane]
GO:0007010 [cytoskeleton organization]
GO:0007165 [signal transduction]
GO:0007399 [nervous system development]
GO:0008083 [growth factor activity]
GO:0009986 [cell surface]
GO:0016020 [membrane]
GO:0030154 [cell differentiation]
GO:0030660 [Golgi-associated vesicle membrane]
GO:0043202 [lysosomal lumen]
GO:0045202 [synapse]
GO:0046907 [intracellular transport]
GO:0048858 [cell projection morphogenesis]
GO:0097060 [synaptic membrane]
GO:0099550 [trans-synaptic signaling, modulating synaptic transmission]
GO:0106091 [glial cell projection elongation]
GO:1900026 [positive regulation of substrate adhesion-dependent cell spreading]
Show all
401 aa
43.6 kDa
No 1
CSPG5-205
ENSP00000478923
ENST00000610462
A0A087WUT8
[Direct mapping] Chondroitin sulfate proteoglycan 5
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
   DeepTMHMM predicted membrane proteins
Show all
GO:0007399 [nervous system development]
GO:0016020 [membrane]
Show all
477 aa
50.2 kDa
Yes 1

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