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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:143.7 nTPM
HPA Brain:68.6 nTPM
GTEx:143.7 nTPM
FANTOM5:176.1 Scaled Tags Per Million
Pig:66.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 68.6
2565 Male, age 75, midline 79.3
1981 Female, age 72, midline 76.1
2048 Male, age 55, midline 71.1
2816 Male, age 47, midline 62.9
2194 Female, age 79, both hemispheres 53.4
Cervical spinal cord, dorsal horn
nTPM: 66.7
2173 Female, age 72, unknown 87.3
2069 Male, age 47, both hemispheres 67.3
2296 Male, age 66, both hemispheres 66.6
2721 Male, age 90, both hemispheres 62.4
2297 Male, age 75, both hemispheres 60.0
1877 Male, age 55, unknown 56.7
Cervical spinal cord, ventral horn
nTPM: 63.0
2098 Female, age 72, unknown 82.3
2480 Male, age 75, both hemispheres 69.1
2295 Male, age 66, both hemispheres 64.8
2809 Male, age 90, both hemispheres 59.5
2068 Male, age 55, unknown 53.6
2820 Female, age 79, both hemispheres 48.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 143.7
Samples: 159

Max nTPM: 236.1
Min nTPM: 76.4
Std nTPM: 28.0
Median nTPM: 146.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 236.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 206.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 205.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 205.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 202.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 200.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 197.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 196.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 195.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 195.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 194.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 185.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 185.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 183.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 182.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 181.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 180.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 178.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 176.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 175.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 173.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 173.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 170.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 170.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 169.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 167.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 166.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 166.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 165.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 165.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 165.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 164.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 164.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 163.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 162.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 162.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 161.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 161.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 160.4
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 159.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 159.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 159.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 158.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 157.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 157.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 157.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 157.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 156.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 156.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 156.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 156.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 155.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 155.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 155.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 155.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 155.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 154.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 154.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 153.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 153.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 152.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 152.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 152.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 151.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 151.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 151.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 150.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 150.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 150.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 150.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 149.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 149.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 148.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 147.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 147.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 147.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 147.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 147.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 147.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 146.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 146.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 145.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 144.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 144.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 144.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 143.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 143.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 142.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 142.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 141.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 141.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 140.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 137.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 137.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 136.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 135.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 134.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 134.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 133.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 131.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 131.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 131.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 130.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 130.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 129.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 129.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 129.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 128.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 127.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 127.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 126.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 123.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 123.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 122.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 121.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 121.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 121.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 121.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 120.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 120.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 119.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 118.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 118.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 118.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 117.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 117.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 117.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 117.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 117.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 116.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 115.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 115.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 114.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 114.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 113.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 113.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 113.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 111.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 110.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 109.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 109.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 108.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 108.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 107.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 106.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 106.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 106.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 106.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 106.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 106.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 103.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 103.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 103.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 100.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 97.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 96.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 94.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 82.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 76.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

176.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 176.1
FF:10181-103D1 60 years, female 205.0
FF:10159-103A6 76 years, female 147.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 60.4
Samples: 4

Max nTPM: 62.5
Min nTPM: 57.6
Sample A Female 60.9
Sample B Female 60.4
Sample C Male 62.5
Sample D Male 57.6
Ventral spinal cord
nTPM: 66.1
Samples: 4

Max nTPM: 70.1
Min nTPM: 58.5
Sample A Female 58.5
Sample B Female 70.1
Sample C Male 69.8
Sample D Male 65.8

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