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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:457.4 nTPM
HPA Brain:102.3 nTPM
GTEx:457.4 nTPM
FANTOM5:184.2 Scaled Tags Per Million
Pig:254.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 68.7
1981 Female, age 72, midline 83.9
2565 Male, age 75, midline 81.7
2048 Male, age 55, midline 60.0
2816 Male, age 47, midline 59.1
2194 Female, age 79, both hemispheres 58.7
Cervical spinal cord, dorsal horn
nTPM: 73.1
2173 Female, age 72, unknown 100.2
2069 Male, age 47, both hemispheres 93.9
2296 Male, age 66, both hemispheres 84.3
1877 Male, age 55, unknown 63.9
2297 Male, age 75, both hemispheres 51.1
2721 Male, age 90, both hemispheres 45.0
Cervical spinal cord, ventral horn
nTPM: 102.3
2480 Male, age 75, both hemispheres 158.4
2809 Male, age 90, both hemispheres 125.7
2098 Female, age 72, unknown 109.2
2295 Male, age 66, both hemispheres 93.1
2068 Male, age 55, unknown 74.8
2820 Female, age 79, both hemispheres 52.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

457.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 457.4
Samples: 159

Max nTPM: 955.3
Min nTPM: 184.8
Std nTPM: 152.3
Median nTPM: 430.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 955.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 872.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 870.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 823.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 819.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 802.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 798.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 791.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 785.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 766.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 709.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 706.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 696.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 671.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 668.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 664.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 662.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 660.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 652.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 647.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 643.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 638.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 630.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 630.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 629.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 625.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 619.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 618.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 614.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 607.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 603.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 601.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 580.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 576.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 567.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 560.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 555.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 541.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 540.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 532.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 531.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 522.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 520.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 519.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 517.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 510.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 510.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 502.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 501.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 497.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 496.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 496.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 489.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 489.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 484.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 484.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 482.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 479.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 479.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 478.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 478.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 468.2
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 465.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 464.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 458.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 456.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 456.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 455.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 453.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 452.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 449.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 448.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 444.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 442.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 441.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 438.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 432.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 431.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 430.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 430.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 429.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 424.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 423.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 422.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 417.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 417.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 415.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 414.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 410.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 408.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 402.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 399.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 397.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 395.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 395.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 387.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 387.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 386.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 383.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 379.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 378.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 378.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 375.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 374.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 373.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 370.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 367.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 367.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 366.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 364.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 361.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 359.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 359.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 359.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 357.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 356.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 356.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 355.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 355.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 348.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 347.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 345.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 342.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 341.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 335.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 334.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 333.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 332.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 330.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 329.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 319.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 319.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 316.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 314.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 314.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 313.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 311.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 310.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 307.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 300.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 296.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 294.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 289.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 278.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 278.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 274.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 271.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 269.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 267.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 266.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 265.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 260.3
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 257.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 255.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 237.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 232.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 215.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 211.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 184.8
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

184.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 184.2
FF:10181-103D1 60 years, female 220.9
FF:10159-103A6 76 years, female 147.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

254.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 254.9
Samples: 4

Max nTPM: 357.2
Min nTPM: 198.0
Sample A Female 198.0
Sample B Female 266.1
Sample C Male 357.2
Sample D Male 198.1
Ventral spinal cord
nTPM: 222.6
Samples: 4

Max nTPM: 251.0
Min nTPM: 180.2
Sample A Female 180.2
Sample B Female 235.2
Sample C Male 251.0
Sample D Male 224.0

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