MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:459.4 nTPM
HPA Brain:77.7 nTPM
GTEx:459.4 nTPM
FANTOM5:131.4 Scaled Tags Per Million
Pig:230.6 nTPM
Mouse:146.5 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 77.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 65.0
2666 Male, age 74, left hemisphere 80.5
2019 Male, age 18, unknown 69.0
2411 Female, age 72, unknown 68.5
1870 Female, age 42, unknown 65.5
2219 Male, age 76, both hemispheres 64.5
1833 Male, age 53, unknown 61.5
2828 Female, age 72, unknown 60.7
1827 Male, age 72, unknown 60.3
2586 Male, age 75, left hemisphere 59.8
1830 Male, age 51, unknown 59.6
Dorsal raphe nucleus
nTPM: 63.0
2298 Female, age 72, unknown 70.2
2750 Male, age 76, both hemispheres 65.4
1828 Male, age 53, unknown 64.6
2047 Male, age 72, unknown 58.2
2016 Female, age 72, unknown 56.7
Inferior colliculus
nTPM: 58.0
1890 Male, age 53, unknown 61.8
2097 Female, age 72, unknown 60.5
1848 Female, age 42, unknown 55.1
2849 Male, age 72, unknown 54.6
Median raphe nucleus
nTPM: 63.7
2220 Male, age 76, midline 63.7
Periaquaductal grey, anterior
nTPM: 64.1
2502 Female, age 75, unknown 77.7
1947 Male, age 18, unknown 57.8
1795 Male, age 51, unknown 56.8
Periaquaductal grey, dorsal
nTPM: 55.4
2464 Female, age 72, unknown 60.0
1831 Male, age 72, unknown 55.4
1840 Male, age 53, unknown 55.2
2850 Male, age 76, both hemispheres 50.9
Periaquaductal grey, lateral
nTPM: 51.1
2053 Male, age 18, unknown 54.4
2140 Male, age 76, both hemispheres 50.9
2272 Male, age 74, both hemispheres 47.9
Pretectal area
nTPM: 59.0
1815 Male, age 53, unknown 67.3
1817 Female, age 42, unknown 67.3
2316 Male, age 76, right hemisphere 66.2
2007 Male, age 72, unknown 64.9
1816 Male, age 51, unknown 63.8
2224 Female, age 72, unknown 61.8
2825 Male, age 18, unknown 60.2
1944 Female, age 72, unknown 55.7
2667 Female, age 75, unknown 49.4
2407 Male, age 75, both hemispheres 46.4
2273 Male, age 74, both hemispheres 45.7
Red nucleus
nTPM: 72.7
2503 Female, age 72, unknown 91.3
1821 Female, age 72, unknown 80.8
2588 Male, age 74, left hemisphere 80.8
2725 Female, age 75, unknown 79.8
1865 Male, age 51, unknown 78.2
1904 Male, age 53, unknown 73.9
2227 Male, age 72, unknown 67.7
2769 Male, age 72, unknown 66.5
2785 Male, age 18, unknown 66.2
1954 Female, age 42, unknown 65.4
2584 Male, age 75, left hemisphere 64.8
2823 Male, age 76, right hemisphere 56.6
Substantia nigra
nTPM: 77.7
2409 Female, age 72, unknown 93.7
2241 Male, age 72, unknown 92.9
1851 Male, age 51, unknown 90.2
2665 Male, age 74, both hemispheres 84.9
2699 Male, age 18, unknown 80.7
1916 Female, age 42, unknown 79.6
1941 Male, age 53, unknown 70.9
2590 Female, age 75, unknown 69.4
1889 Female, age 72, unknown 64.9
2583 Male, age 75, right hemisphere 50.2
Superior colliculus
nTPM: 60.6
2587 Male, age 74, left hemisphere 81.0
1913 Female, age 42, unknown 65.0
1995 Male, age 72, unknown 63.0
2087 Female, age 72, unknown 59.4
1839 Male, age 51, unknown 59.0
1895 Male, age 76, right hemisphere 58.3
2261 Male, age 18, unknown 58.2
2668 Female, age 75, unknown 57.8
1796 Male, age 53, unknown 55.4
2664 Male, age 75, both hemispheres 49.0
Ventral tegmental area
nTPM: 70.7
1915 Female, age 42, unknown 79.2
2410 Female, age 72, unknown 78.5
2223 Female, age 72, unknown 71.7
2021 Male, age 53, unknown 67.1
2218 Male, age 76, both hemispheres 65.6
1942 Male, age 51, unknown 62.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 459.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 459.4
Samples: 139

Max nTPM: 1276.7
Min nTPM: 240.9
Std nTPM: 172.2
Median nTPM: 418.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 1276.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1072.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1048.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1013.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 819.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 805.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 748.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 725.2
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 721.6
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 713.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 711.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 131.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 131.4
FF:10158-103A5 76 years, female 131.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 230.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 220.4
Samples: 4

Max nTPM: 287.4
Min nTPM: 170.9
Sample A Female 287.4
Sample B Female 220.9
Sample C Male 202.4
Sample D Male 170.9
Midbrain
nTPM: 215.2
Samples: 4

Max nTPM: 260.4
Min nTPM: 184.4
Sample A Female 260.4
Sample B Female 228.2
Sample C Male 184.4
Sample D Male 187.9
Periaqueductal gray
nTPM: 189.4
Samples: 3

Max nTPM: 208.6
Min nTPM: 174.2
Sample B Female 185.4
Sample C Male 208.6
Sample D Male 174.2
Superior colliculi
nTPM: 230.6
Samples: 4

Max nTPM: 275.9
Min nTPM: 198.9
Sample A Female 275.9
Sample B Female 235.8
Sample C Male 211.6
Sample D Male 198.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 146.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 146.6
Samples: 4

Max nTPM: 156.9
Min nTPM: 135.0
Sample A Male 155.6
Sample B Male 138.7
Sample C Female 135.0
Sample D Female 156.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
75934526 Antisense, RP_060530_01_E02, Mouse strain C57BL/6J (56 days, male) 9.0
68443148 Antisense, RP_050111_01_D10, Mouse strain C57BL/6J (56 days, male) 2.5

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