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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:144.3 nTPM
HPA Brain:163.5 nTPM
GTEx:144.3 nTPM
FANTOM5:388.2 Scaled Tags Per Million
Pig:105.9 nTPM
Mouse:24.2 nTPM
Allen mouse:21.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.5
Sample id Sample description nTPM
Amygdala
nTPM: 161.2
2695 Female, age 67, right hemisphere 221.6
2814 Male, age 76, right hemisphere 164.4
2514 Male, age 75, right hemisphere 150.1
2517 Female, age 94, left hemisphere 143.7
1987 Female, age 91, left hemisphere 126.4
Basal amygdala
nTPM: 144.4
2827 Female, age 67, right hemisphere 180.6
2609 Male, age 75, right hemisphere 150.4
1955 Male, age 76, both hemispheres 145.5
2243 Female, age 91, right hemisphere 140.7
2110 Male, age 80, left hemisphere 129.4
2685 Female, age 94, left hemisphere 119.5
Central amygdala
nTPM: 163.5
2826 Female, age 94, left hemisphere 227.1
2239 Male, age 80, left hemisphere 158.4
1905 Male, age 76, both hemispheres 146.3
2515 Male, age 75, right hemisphere 145.7
2701 Female, age 91, right hemisphere 139.7
Corticomedial amygdala
nTPM: 139.7
2535 Female, age 67, right hemisphere 171.1
2240 Male, age 76, both hemispheres 167.1
2242 Female, age 91, right hemisphere 130.8
2829 Male, age 80, left hemisphere 128.5
2428 Male, age 75, right hemisphere 124.9
2429 Female, age 94, left hemisphere 115.9
Lateral amygdala
nTPM: 160.3
2830 Female, age 67, right hemisphere 217.9
2534 Female, age 94, left hemisphere 173.5
2516 Male, age 75, right hemisphere 166.2
1883 Male, age 76, both hemispheres 145.1
2256 Male, age 80, left hemisphere 139.9
2255 Female, age 91, right hemisphere 119.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 144.3
Samples: 152

Max nTPM: 288.2
Min nTPM: 97.1
Std nTPM: 24.6
Median nTPM: 141.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 288.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 202.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 199.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 196.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 189.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 186.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 184.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 183.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 182.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 182.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 182.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 181.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 180.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 177.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 177.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 176.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 174.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 174.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 172.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 171.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 170.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 169.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 166.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 166.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 164.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 163.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 163.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 163.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 162.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 162.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 161.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 161.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 161.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 160.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 160.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 159.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 159.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 158.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 157.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 157.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 157.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 156.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 156.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 155.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 155.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 155.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 153.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 153.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 152.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 152.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 151.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 151.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 151.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 150.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 150.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 150.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 148.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 148.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 147.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 147.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 147.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 146.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 146.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 146.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 146.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 145.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 144.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 144.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 143.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 143.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 142.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 142.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 142.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 141.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 141.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 141.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 140.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 139.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 139.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 139.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 138.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 138.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 138.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 138.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 138.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 137.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 137.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 136.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 135.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 135.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 135.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 134.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 134.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 133.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 133.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 133.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 133.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 132.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 132.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 132.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 131.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 131.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 130.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 130.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 129.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 128.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 128.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 128.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 128.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 128.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 127.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 127.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 127.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 127.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 127.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 126.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 126.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 125.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 125.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 125.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 124.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 124.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 123.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 123.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 122.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 122.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 122.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 121.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 121.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 121.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 121.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 121.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 120.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 118.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 118.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 118.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 117.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 116.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 115.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 115.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 114.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 114.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 113.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 112.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 110.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 110.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 104.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 103.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 102.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 101.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 97.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

388.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 388.2
FF:10151-102I7 76 years, female 388.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

105.9
Pig sample Sample description nTPM
Amygdala
nTPM: 105.9
Samples: 4

Max nTPM: 128.7
Min nTPM: 89.6
Sample A Female 128.7
Sample B Female 109.4
Sample C Male 89.6
Sample D Male 96.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

24.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 24.2
Samples: 4

Max nTPM: 25.6
Min nTPM: 22.2
Sample A Male 25.4
Sample B Male 22.2
Sample C Female 23.6
Sample D Female 25.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.2
68442979 Antisense, RP_050111_01_B06, Mouse strain C57BL/6J (56 days, male) 21.2

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