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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:126.5 nTPM
HPA:126.5 nTPM
GTEx:47.7 nTPM
FANTOM5:54.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036760Antibody HPA036761Antibody CAB000040
Endocrine cells --Not detected
Enterocytes --Not detected
Enterocytes - Microvilli --Not detected
Glandular cells MediumMedium-
Goblet cells --Not detected
Paneth cells --Not detected







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.5
overview
Male, age 65
Small intestine sample 232
nTPM: 15.1
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 263
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 106.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 121.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

47.7
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 47.7
Samples: 187

Max nTPM: 214.2
Min nTPM: 0.0
Std nTPM: 43.5
Median nTPM: 41.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 214.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 182.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 167.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 158.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 158.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 144.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 142.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 140.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 134.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 132.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 126.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 123.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 118.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 116.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 115.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 114.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 113.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 111.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 110.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 109.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 105.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 102.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 100.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 97.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 97.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 96.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 95.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 95.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 95.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 91.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 89.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 88.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 84.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 84.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 83.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 83.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 82.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 81.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 81.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 80.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 79.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 78.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 77.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 74.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 74.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 74.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 74.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 72.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 70.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 70.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 69.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 68.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 68.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 66.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 65.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 65.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 65.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 65.0
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 65.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 64.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 64.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 63.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 63.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 63.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 62.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 62.1
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 61.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 59.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 59.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 57.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 56.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 54.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 52.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 52.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 50.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 50.7
GTEX-1122O-1326-SM-5H11F 60-69 years, female 49.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 48.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 47.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 47.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 47.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 46.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 46.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 45.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 45.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 45.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 43.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 42.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 42.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 42.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 42.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 41.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 41.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 41.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 41.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 40.8
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 39.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 39.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 38.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 38.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 37.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 35.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 35.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 34.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 34.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 33.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 32.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 32.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 31.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 31.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 31.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 31.4
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 29.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 29.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 27.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 27.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 26.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 26.6
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 25.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 24.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 24.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 22.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 20.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 19.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 18.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 18.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 17.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 17.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 16.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 15.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 14.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 11.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 10.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 9.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 9.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 9.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 8.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 8.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 7.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 7.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 6.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 6.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 6.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 6.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 4.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 4.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 4.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 3.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 2.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 2.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 2.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2.0
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 0.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 0.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 0.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 0.7
GTEX-1192X-2526-SM-59868 50-59 years, male 0.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 0.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 0.5
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 0.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 0.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 0.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 0.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 0.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 0.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 0.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 0.2
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 0.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 0.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 0.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

54.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 54.7
FF:10024-101D6 15,40,85 years, mixed 54.7

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