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CLIP4
HPA
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  • SUMMARY

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  • CLIP4
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

CLIP4
Synonyms FLJ21069, RSNL2
Gene descriptioni

Full gene name according to HGNC.

CAP-Gly domain containing linker protein family member 4
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 2
Cytoband p23.2
Chromosome location (bp) 29097705 - 29199777
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

21
Ensembl ENSG00000115295 (version 109)
Entrez gene 79745
HGNC HGNC:26108
UniProt Q8N3C7 (UniProt - Evidence at protein level)
neXtProt NX_Q8N3C7
GeneCards CLIP4
Antibodypedia CLIP4 antibodies


PROTEIN FUNCTION
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable microtubule plus-end binding activity. Predicted to be involved in cytoplasmic microtubule organization. Located in intracellular membrane-bounded organelle. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
CLIP4-201
ENSP00000327009
ENST00000320081
Q8N3C7
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0031122 [cytoplasmic microtubule organization]
GO:0035371 [microtubule plus-end]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0051010 [microtubule plus-end binding]
Show all
705 aa
76.3 kDa
No 0
CLIP4-202
ENSP00000384242
ENST00000401605
Q8N3C7
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0031122 [cytoplasmic microtubule organization]
GO:0035371 [microtubule plus-end]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0051010 [microtubule plus-end binding]
Show all
599 aa
65 kDa
No 0
CLIP4-203
ENSP00000385148
ENST00000401617
B5MCH3
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
   MEMSAT3 predicted membrane proteins
   SCAMPI predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
571 aa
61.5 kDa
No 0
CLIP4-204
ENSP00000385594
ENST00000404424
Q8N3C7
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0031122 [cytoplasmic microtubule organization]
GO:0035371 [microtubule plus-end]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0051010 [microtubule plus-end binding]
Show all
705 aa
76.3 kDa
No 0
CLIP4-206
ENSP00000392296
ENST00000438819
C9IYE4
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
93 aa
10.2 kDa
No 0
CLIP4-207
ENSP00000393354
ENST00000449202
E7EW06
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0043231 [intracellular membrane-bounded organelle]
Show all
214 aa
23.5 kDa
No 0
CLIP4-209
ENSP00000508517
ENST00000471165
A0A8I5KX39
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
15 aa
1.6 kDa
No 0
CLIP4-214
ENSP00000508555
ENST00000685829
A0A8I5KTX2
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
123 aa
13.7 kDa
No 0
CLIP4-217
ENSP00000509281
ENST00000686848
A0A8I5KRK9
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
618 aa
66.8 kDa
No 0
CLIP4-218
ENSP00000508721
ENST00000687104
A0A8I5QKL4
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
568 aa
61.2 kDa
No 0
CLIP4-220
ENSP00000508879
ENST00000687450
A0A8I5QKM8
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   # TM segments-based
   1TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
637 aa
69 kDa
No 1
CLIP4-221
ENSP00000509486
ENST00000687506
A0A8I5KTC6
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
712 aa
77.2 kDa
No 0
CLIP4-222
ENSP00000510043
ENST00000687889
A0A8I5KW63
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
381 aa
40.5 kDa
No 0
CLIP4-226
ENSP00000510497
ENST00000689017
A0A8I5KRC7
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
   SPOCTOPUS predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
660 aa
71.5 kDa
No 0
CLIP4-228
ENSP00000509643
ENST00000689070
A0A8I5QKV0
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
596 aa
64.3 kDa
No 0
CLIP4-229
ENSP00000508948
ENST00000689605
A0A8I5KUB8
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
666 aa
72 kDa
No 0
CLIP4-231
ENSP00000508552
ENST00000690063
Q8N3C7
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0031122 [cytoplasmic microtubule organization]
GO:0035371 [microtubule plus-end]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0051010 [microtubule plus-end binding]
Show all
705 aa
76.3 kDa
No 0
CLIP4-233
ENSP00000510138
ENST00000691129
A0A8I5KVT2
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
   Phobius predicted membrane proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
629 aa
68.1 kDa
No 0
CLIP4-236
ENSP00000510127
ENST00000691585
A0A8I5KYN5
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
240 aa
26.4 kDa
No 0
CLIP4-237
ENSP00000509274
ENST00000691796
A0A8I5KXU9
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
Show all
598 aa
64.3 kDa
No 0
CLIP4-241
ENSP00000509159
ENST00000693264
Q8N3C7
[Direct mapping] CAP-Gly domain-containing linker protein 4
Show all
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005515 [protein binding]
GO:0005634 [nucleus]
GO:0005737 [cytoplasm]
GO:0031122 [cytoplasmic microtubule organization]
GO:0035371 [microtubule plus-end]
GO:0043231 [intracellular membrane-bounded organelle]
GO:0051010 [microtubule plus-end binding]
Show all
705 aa
76.3 kDa
No 0

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