We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SPTBN1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SPTBN1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:94.8 nTPM
HPA Brain:503.0 nTPM
GTEx:94.8 nTPM
FANTOM5:571.8 Scaled Tags Per Million
Pig:330.8 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

503.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 424.0
2565 Male, age 75, midline 516.4
2048 Male, age 55, midline 426.9
2194 Female, age 79, both hemispheres 421.6
1981 Female, age 72, midline 383.5
2816 Male, age 47, midline 371.4
Cervical spinal cord, dorsal horn
nTPM: 373.5
2173 Female, age 72, unknown 399.2
1877 Male, age 55, unknown 378.1
2721 Male, age 90, both hemispheres 377.6
2069 Male, age 47, both hemispheres 369.0
2296 Male, age 66, both hemispheres 367.7
2297 Male, age 75, both hemispheres 349.1
Cervical spinal cord, ventral horn
nTPM: 503.0
2480 Male, age 75, both hemispheres 666.1
2809 Male, age 90, both hemispheres 598.6
2295 Male, age 66, both hemispheres 535.1
2098 Female, age 72, unknown 417.0
2820 Female, age 79, both hemispheres 414.8
2068 Male, age 55, unknown 386.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 94.8
Samples: 159

Max nTPM: 278.0
Min nTPM: 29.5
Std nTPM: 36.7
Median nTPM: 89.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 278.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 246.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 186.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 182.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 181.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 175.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 170.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 167.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 162.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 156.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 155.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 153.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 148.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 146.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 137.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 137.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 136.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 131.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 131.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 130.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 126.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 125.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 125.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 124.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 124.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 123.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 122.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 120.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 120.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 120.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 119.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 119.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 119.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 118.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 118.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 118.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 118.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 117.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 114.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 114.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 114.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 113.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 110.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 110.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 107.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 106.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 105.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 105.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 103.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 102.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 100.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 99.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 99.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 99.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 99.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 98.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 98.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 97.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 97.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 96.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 96.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 95.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 94.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 94.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 93.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 93.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 92.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 92.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 92.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 90.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 90.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 90.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 90.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 90.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 90.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 89.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 89.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 89.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 89.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 89.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 88.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 88.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 88.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 88.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 87.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 87.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 85.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 85.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 84.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 84.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 84.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 83.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 83.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 83.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 83.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 83.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 82.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 82.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 81.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 81.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 81.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 81.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 80.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 79.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 79.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 78.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 78.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 78.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 78.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 77.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 77.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 76.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 75.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 75.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 75.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 75.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 74.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 73.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 73.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 72.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 70.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 69.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 69.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 68.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 68.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 67.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 67.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 67.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 67.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 66.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 66.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 65.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 63.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 63.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 62.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 62.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 59.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 58.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 58.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 58.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 58.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 58.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 57.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 56.2
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 54.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 54.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 51.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 51.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 50.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 49.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 48.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 47.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 44.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 40.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 39.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 35.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 35.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 34.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 29.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

571.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 571.8
FF:10181-103D1 60 years, female 670.0
FF:10159-103A6 76 years, female 473.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

330.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 330.9
Samples: 4

Max nTPM: 414.5
Min nTPM: 285.2
Sample A Female 288.1
Sample B Female 285.2
Sample C Male 414.5
Sample D Male 335.6
Ventral spinal cord
nTPM: 326.3
Samples: 4

Max nTPM: 363.6
Min nTPM: 285.8
Sample A Female 342.3
Sample B Female 285.8
Sample C Male 363.6
Sample D Male 313.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org