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RTN4
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:393.3 nTPM
FANTOM5:662.3 Scaled Tags Per Million
Pig:448.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA023977Antibody CAB005388
Glial cells HighHigh
Neuronal cells Not detectedHigh





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

393.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 393.3
Samples: 246

Max nTPM: 1015.1
Min nTPM: 159.1
Std nTPM: 140.7
Median nTPM: 356.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 1015.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 861.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 843.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 842.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 810.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 771.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 738.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 733.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 664.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 657.0
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 655.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 654.1
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 643.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 637.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 626.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 618.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 610.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 606.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 598.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 596.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 589.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 586.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 585.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 579.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 574.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 571.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 571.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 570.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 563.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 559.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 558.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 551.9
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 549.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 548.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 546.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 543.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 539.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 535.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 533.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 533.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 530.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 524.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 523.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 519.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 515.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 511.2
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 508.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 505.5
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 505.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 502.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 498.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 497.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 492.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 491.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 491.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 488.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 487.7
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 483.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 482.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 482.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 481.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 480.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 480.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 479.5
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 474.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 468.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 467.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 464.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 460.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 459.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 457.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 454.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 453.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 449.9
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 446.8
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 445.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 442.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 439.5
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 437.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 435.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 433.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 429.6
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 428.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 425.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 424.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 423.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 422.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 421.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 418.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 417.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 417.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 415.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 414.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 411.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 410.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 410.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 409.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 407.3
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 404.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 400.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 397.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 396.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 396.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 395.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 395.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 392.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 387.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 387.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 386.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 384.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 384.1
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 383.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 383.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 382.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 373.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 372.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 371.7
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 362.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 360.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 358.8
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 358.8
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 357.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 356.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 356.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 353.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 352.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 352.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 350.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 350.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 349.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 346.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 343.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 343.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 342.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 341.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 340.1
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 339.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 338.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 338.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 337.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 336.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 335.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 334.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 334.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 334.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 333.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 333.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 332.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 332.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 332.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 331.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 331.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 330.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 330.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 328.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 327.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 327.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 326.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 325.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 324.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 320.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 320.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 317.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 314.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 313.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 313.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 312.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 311.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 310.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 310.0
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 309.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 308.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 308.4
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 307.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 306.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 304.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 303.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 303.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 301.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 300.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 299.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 299.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 296.5
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 296.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 295.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 294.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 292.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 292.1
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 291.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 287.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 286.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 285.7
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 283.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 281.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 281.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 278.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 277.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 276.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 275.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 274.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 274.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 273.0
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 270.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 267.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 265.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 265.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 263.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 259.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 259.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 258.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 254.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 251.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 245.5
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 242.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 242.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 239.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 239.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 238.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 237.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 237.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 235.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 235.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 234.6
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 234.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 233.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 226.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 226.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 226.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 226.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 225.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 223.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 223.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 223.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 219.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 214.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 213.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 212.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 208.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 206.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 204.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 201.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 196.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 194.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 194.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 168.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 159.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

662.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 662.3
FF:10164-103B2 76 years, female 662.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

448.3
Pig sample Sample description nTPM
Caudate
nTPM: 448.3
Samples: 4

Max nTPM: 506.4
Min nTPM: 401.6
Sample A Female 448.5
Sample B Female 401.6
Sample C Male 506.4
Sample D Male 436.6

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