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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Not detected
Enterocytes - Microvilli: Not detected
Goblet cells: Not detected
Paneth cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:284.3 nTPM
HPA:284.3 nTPM
GTEx:140.1 nTPM
FANTOM5:488.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA023977Antibody CAB005388
Endocrine cells Not detected-
Enterocytes Not detected-
Enterocytes - Microvilli Not detected-
Glandular cells -Low
Goblet cells Not detected-
Paneth cells Not detected-




SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

284.3
overview
Male, age 65
Small intestine sample 232
nTPM: 242.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 320.3
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 299
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 275.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 140.1
Samples: 187

Max nTPM: 562.7
Min nTPM: 49.8
Std nTPM: 61.8
Median nTPM: 132.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 562.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 278.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 271.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 263.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 262.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 261.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 258.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 256.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 248.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 246.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 244.5
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 244.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 241.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 240.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 228.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 225.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 224.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 217.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 214.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 210.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 209.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 208.4
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 201.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 201.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 200.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 197.8
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 197.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 196.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 193.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 193.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 192.5
GTEX-1192X-2526-SM-59868 50-59 years, male 189.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 189.1
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 188.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 186.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 185.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 184.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 183.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 182.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 182.0
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 181.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 179.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 179.0
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 178.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 177.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 176.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 173.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 172.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 172.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 171.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 170.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 170.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 170.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 169.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 169.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 167.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 167.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 166.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 163.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 162.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 162.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 161.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 161.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 160.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 158.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 158.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 157.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 157.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 156.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 155.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 154.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 154.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 153.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 149.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 148.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 146.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 145.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 145.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 144.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 141.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 141.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 141.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 140.7
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 140.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 139.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 138.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 138.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 135.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 135.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 133.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 133.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 133.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 133.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 132.8
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 132.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 130.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 130.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 129.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 127.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 125.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 125.0
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 124.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 124.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 121.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 121.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 121.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 120.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 118.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 117.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 114.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 113.0
GTEX-14PK6-1626-SM-6871I 70-79 years, female 112.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 111.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 110.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 110.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 109.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 109.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 108.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 108.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 107.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 107.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 105.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 104.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 104.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 104.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 103.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 102.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 102.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 102.3
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 100.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 99.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 98.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 97.7
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 97.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 97.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 96.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 95.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 94.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 94.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 93.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 93.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 92.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 91.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 91.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 91.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 90.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 90.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 89.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 89.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 88.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 88.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 88.1
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 88.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 86.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 86.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 84.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 84.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 82.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 82.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 82.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 80.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 80.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 78.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 77.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 77.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 76.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 76.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 75.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 75.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 72.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 70.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 70.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 70.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 70.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 68.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 67.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 67.1
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 65.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 65.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 64.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 62.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 61.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 59.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 58.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 55.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 54.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 49.8
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

488.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 488.5
FF:10024-101D6 15,40,85 years, mixed 488.5

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