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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Not detected
Enterocytes: Medium
Enterocytes - Gradient: Descending
Enterocytes - Microvilli: Not detected
Goblet cells: High
Paneth cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:5486.6 nTPM
HPA:4272.6 nTPM
GTEx:5486.6 nTPM
FANTOM5:2228.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA045549Antibody HPA045579Antibody CAB025138
Endocrine cells -Not detected-
Enterocytes -Medium-
Enterocytes - Gradient -Descending-
Enterocytes - Microvilli -Not detected-
Glandular cells Medium-High
Goblet cells -High-
Paneth cells -High-






SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4272.6
overview
Male, age 65
Small intestine sample 232
nTPM: 4453.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 2034.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 5385.6
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 5216.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5486.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 5486.6
Samples: 187

Max nTPM: 70370.1
Min nTPM: 1.2
Std nTPM: 9685.0
Median nTPM: 1789.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 70370.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 62597.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 39024.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 37050.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 31538.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 29743.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 27018.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 24097.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 22757.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 22509.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 22251.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 20709.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 20694.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 20339.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 18246.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 17523.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 16937.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 16864.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 16849.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 15868.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 15098.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 15089.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 14618.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 14616.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 14018.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 13742.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 12052.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 11837.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 11786.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 11267.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 11262.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 10300.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 10030.4
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 9747.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 9541.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 9540.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 9342.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 8893.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 8567.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 8512.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 8237.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 8151.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 7904.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 7243.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 6829.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 6654.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 6523.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 5948.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 5725.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 5708.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 5004.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 4986.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 4885.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 4534.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 4263.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 4198.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 4138.2
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 4116.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 4101.7
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 3984.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 3679.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 3268.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 3185.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 3007.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 2928.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2847.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2694.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 2628.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 2614.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2612.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2559.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 2532.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 2509.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2508.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 2496.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 2409.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 2409.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 2372.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2332.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 2316.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2251.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2233.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2194.8
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2171.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2114.9
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 2039.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1969.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 1965.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 1950.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1917.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1898.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1890.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1854.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 1789.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1751.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1751.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1745.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1632.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1544.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1491.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1485.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 1399.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1365.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1312.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1267.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1195.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1146.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1122.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1104.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1060.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1023.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 990.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 949.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 948.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 943.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 927.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 847.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 822.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 794.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 783.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 761.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 744.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 737.1
GTEX-13O61-1326-SM-5KM31 60-69 years, male 736.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 702.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 690.8
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 675.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 622.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 599.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 590.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 584.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 562.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 536.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 516.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 508.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 476.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 422.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 413.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 412.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 401.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 398.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 350.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 332.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 318.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 314.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 226.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 218.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 203.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 185.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 180.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 171.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 163.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 136.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 131.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 128.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 125.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 113.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 98.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 92.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 84.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 81.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 72.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 68.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 66.8
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 58.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 50.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 38.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 35.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 33.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 29.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 28.8
GTEX-1192X-2526-SM-59868 50-59 years, male 21.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 21.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 20.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 19.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 18.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 16.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 15.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 15.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 13.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 9.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 8.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 7.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 4.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1.2
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2228.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 2228.3
FF:10024-101D6 15,40,85 years, mixed 2228.3

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