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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:135.3 nTPM
HPA:53.4 nTPM
GTEx:135.3 nTPM
FANTOM5:201.8 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.4
overview
Male, age 65
Small intestine sample 232
nTPM: 21.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 42.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 88
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 61.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 135.3
Samples: 187

Max nTPM: 407.4
Min nTPM: 27.5
Std nTPM: 80.3
Median nTPM: 109.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 407.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 394.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 391.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 381.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 362.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 354.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 325.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 314.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 296.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 296.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 292.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 292.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 292.1
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 281.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 280.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 275.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 272.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 269.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 268.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 267.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 259.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 251.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 250.1
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 248.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 246.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 243.8
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 238.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 232.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 224.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 222.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 218.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 217.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 196.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 196.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 181.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 181.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 179.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 178.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 174.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 172.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 172.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 171.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 166.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 165.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 164.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 164.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 163.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 163.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 156.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 156.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 154.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 153.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 153.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 151.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 150.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 150.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 149.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 148.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 148.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 147.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 147.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 146.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 144.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 144.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 143.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 139.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 136.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 135.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 134.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 130.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 129.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 129.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 127.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 126.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 125.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 125.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 125.0
GTEX-1192X-2526-SM-59868 50-59 years, male 122.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 122.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 121.0
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 120.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 120.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 119.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 118.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 118.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 118.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 117.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 117.2
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 117.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 115.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 115.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 113.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 112.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 109.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 109.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 109.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 107.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 107.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 107.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 104.3
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 103.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 102.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 102.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 102.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 101.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 100.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 100.1
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 99.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 98.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 98.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 97.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 96.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 96.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 96.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 96.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 95.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 95.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 94.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 94.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 93.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 93.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 92.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 92.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 92.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 91.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 90.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 90.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 90.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 90.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 89.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 86.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 85.7
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 85.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 84.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 84.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 84.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 84.0
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 82.2
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 82.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 81.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 80.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 79.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 78.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 77.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 76.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 76.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 75.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 75.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 74.9
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 74.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 73.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 71.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 71.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 70.3
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 70.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 69.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 69.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 68.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 67.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 67.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 66.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 65.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 63.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 63.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 62.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 61.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 60.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 59.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 58.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 58.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 57.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 55.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 54.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 54.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 54.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 52.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 50.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 49.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 46.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 43.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 42.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 40.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 38.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 35.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 33.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 27.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 27.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

201.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 201.8
FF:10024-101D6 15,40,85 years, mixed 201.8

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