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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:225.1 nTPM
HPA:119.8 nTPM
GTEx:225.1 nTPM
FANTOM5:270.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA050275
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.8
overview
Male, age 65
Small intestine sample 232
nTPM: 136.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 115.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 111.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 115.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

225.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 225.1
Samples: 187

Max nTPM: 392.5
Min nTPM: 104.1
Std nTPM: 62.6
Median nTPM: 220.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 392.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 387.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 371.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 365.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 364.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 351.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 350.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 347.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 346.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 346.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 346.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 338.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 335.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 335.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 329.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 327.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 325.3
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 324.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 318.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 315.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 315.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 311.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 310.4
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 310.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 309.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 305.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 303.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 300.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 297.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 286.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 285.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 282.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 281.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 280.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 280.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 279.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 277.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 274.0
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 272.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 271.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 271.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 270.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 268.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 265.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 263.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 263.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 261.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 261.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 260.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 259.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 258.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 258.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 256.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 256.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 252.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 252.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 251.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 250.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 249.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 249.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 248.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 247.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 247.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 246.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 243.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 240.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 240.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 239.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 238.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 238.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 237.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 236.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 233.8
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 233.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 232.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 232.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 232.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 232.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 231.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 231.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 231.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 230.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 230.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 227.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 225.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 225.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 225.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 224.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 224.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 223.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 223.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 222.4
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 220.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 220.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 219.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 218.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 218.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 217.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 216.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 216.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 214.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 213.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 210.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 208.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 208.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 208.1
GTEX-144GM-1026-SM-79OKU 20-29 years, male 207.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 206.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 206.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 205.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 204.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 203.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 202.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 202.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 201.1
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 201.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 200.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 197.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 196.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 195.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 195.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 194.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 194.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 194.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 193.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 193.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 192.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 190.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 189.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 188.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 188.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 187.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 183.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 182.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 179.5
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 178.8
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 178.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 178.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 176.9
GTEX-YFCO-1326-SM-664NV 40-49 years, male 176.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 176.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 175.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 174.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 174.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 174.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 172.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 171.1
GTEX-1192X-2526-SM-59868 50-59 years, male 169.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 169.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 169.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 169.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 168.9
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 168.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 168.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 165.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 164.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 162.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 162.0
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 160.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 159.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 159.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 158.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 156.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 154.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 153.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 152.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 151.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 151.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 148.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 148.1
GTEX-117YX-0326-SM-5GICL 50-59 years, male 146.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 143.1
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 142.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 137.9
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 134.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 133.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 132.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 131.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 131.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 129.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 128.7
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 126.6
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 123.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 118.1
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 117.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 114.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 104.1
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

270.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 270.6
FF:10024-101D6 15,40,85 years, mixed 270.6

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