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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:200.5 nTPM
HPA Brain:89.4 nTPM
GTEx:200.5 nTPM
FANTOM5:261.5 Scaled Tags Per Million
Mouse:166.3 nTPM
Allen mouse:12.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

89.4
Sample id Sample description nTPM
Amygdala
nTPM: 89.4
2814 Male, age 76, right hemisphere 105.7
2514 Male, age 75, right hemisphere 95.4
1987 Female, age 91, left hemisphere 90.3
2695 Female, age 67, right hemisphere 81.4
2517 Female, age 94, left hemisphere 74.5
Basal amygdala
nTPM: 63.0
1955 Male, age 76, both hemispheres 78.5
2609 Male, age 75, right hemisphere 71.5
2110 Male, age 80, left hemisphere 68.2
2243 Female, age 91, right hemisphere 66.8
2685 Female, age 94, left hemisphere 52.9
2827 Female, age 67, right hemisphere 40.3
Central amygdala
nTPM: 74.4
1905 Male, age 76, both hemispheres 92.1
2515 Male, age 75, right hemisphere 76.2
2701 Female, age 91, right hemisphere 69.1
2239 Male, age 80, left hemisphere 68.2
2826 Female, age 94, left hemisphere 66.4
Corticomedial amygdala
nTPM: 66.8
2240 Male, age 76, both hemispheres 80.5
2428 Male, age 75, right hemisphere 77.6
2242 Female, age 91, right hemisphere 68.1
2829 Male, age 80, left hemisphere 67.6
2429 Female, age 94, left hemisphere 60.3
2535 Female, age 67, right hemisphere 46.3
Lateral amygdala
nTPM: 62.1
1883 Male, age 76, both hemispheres 83.9
2516 Male, age 75, right hemisphere 74.0
2534 Female, age 94, left hemisphere 61.8
2256 Male, age 80, left hemisphere 56.6
2255 Female, age 91, right hemisphere 49.5
2830 Female, age 67, right hemisphere 46.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 200.5
Samples: 152

Max nTPM: 795.9
Min nTPM: 85.6
Std nTPM: 118.5
Median nTPM: 159.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 795.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 701.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 626.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 600.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 597.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 557.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 527.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 480.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 477.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 415.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 366.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 355.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 349.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 343.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 343.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 341.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 332.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 318.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 313.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 310.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 303.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 289.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 263.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 242.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 239.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 239.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 236.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 225.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 224.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 221.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 220.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 218.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 217.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 216.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 215.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 211.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 210.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 209.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 204.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 203.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 202.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 201.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 199.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 198.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 198.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 195.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 194.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 194.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 193.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 190.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 190.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 189.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 188.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 187.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 186.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 184.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 184.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 184.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 182.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 182.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 178.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 177.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 176.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 170.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 170.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 169.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 168.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 167.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 166.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 166.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 165.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 165.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 161.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 161.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 160.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 159.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 159.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 158.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 157.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 156.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 156.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 156.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 155.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 154.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 154.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 154.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 152.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 152.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 151.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 151.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 150.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 150.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 148.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 148.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 147.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 146.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 144.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 144.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 143.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 143.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 143.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 143.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 140.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 140.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 140.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 140.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 139.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 136.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 136.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 136.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 136.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 136.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 136.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 134.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 134.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 133.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 133.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 133.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 132.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 132.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 132.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 131.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 130.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 130.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 130.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 129.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 128.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 128.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 128.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 127.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 124.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 124.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 123.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 123.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 122.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 122.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 122.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 119.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 118.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 115.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 114.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 113.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 113.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 113.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 112.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 111.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 109.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 108.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 106.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 105.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 102.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 85.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

261.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 261.5
FF:10151-102I7 76 years, female 261.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 166.4
Samples: 4

Max nTPM: 182.0
Min nTPM: 158.7
Sample A Male 158.7
Sample B Male 182.0
Sample C Female 163.5
Sample D Female 161.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 12.0
68499485 Antisense, RP_050118_01_F05, Mouse strain C57BL/6J (56 days, male) 12.0

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