MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.9 nTPM
HPA Brain:91.0 nTPM
GTEx:72.9 nTPM
FANTOM5:127.5 Scaled Tags Per Million
Pig:77.4 nTPM
Mouse:148.0 nTPM
Allen mouse:1.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 91.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.7
2828 Female, age 72, unknown 87.2
2586 Male, age 75, left hemisphere 73.6
1870 Female, age 42, unknown 61.1
1833 Male, age 53, unknown 58.9
1830 Male, age 51, unknown 58.7
1827 Male, age 72, unknown 57.5
2219 Male, age 76, both hemispheres 51.5
2666 Male, age 74, left hemisphere 47.2
2411 Female, age 72, unknown 41.6
2019 Male, age 18, unknown 39.7
Dorsal raphe nucleus
nTPM: 71.9
2016 Female, age 72, unknown 93.2
2298 Female, age 72, unknown 70.8
1828 Male, age 53, unknown 68.9
2750 Male, age 76, both hemispheres 64.8
2047 Male, age 72, unknown 61.7
Inferior colliculus
nTPM: 63.5
1848 Female, age 42, unknown 83.8
2849 Male, age 72, unknown 63.5
2097 Female, age 72, unknown 56.4
1890 Male, age 53, unknown 50.5
Median raphe nucleus
nTPM: 91.0
2220 Male, age 76, midline 91.0
Periaquaductal grey, anterior
nTPM: 65.5
1795 Male, age 51, unknown 75.5
1947 Male, age 18, unknown 69.0
2502 Female, age 75, unknown 52.1
Periaquaductal grey, dorsal
nTPM: 66.0
1831 Male, age 72, unknown 82.3
1840 Male, age 53, unknown 74.6
2850 Male, age 76, both hemispheres 60.2
2464 Female, age 72, unknown 47.0
Periaquaductal grey, lateral
nTPM: 89.7
2272 Male, age 74, both hemispheres 121.1
2053 Male, age 18, unknown 84.5
2140 Male, age 76, both hemispheres 63.7
Pretectal area
nTPM: 71.6
2273 Male, age 74, both hemispheres 124.2
2407 Male, age 75, both hemispheres 88.2
2667 Female, age 75, unknown 81.7
2224 Female, age 72, unknown 80.7
2825 Male, age 18, unknown 80.4
1944 Female, age 72, unknown 65.5
1817 Female, age 42, unknown 63.0
1815 Male, age 53, unknown 61.8
2316 Male, age 76, right hemisphere 60.8
1816 Male, age 51, unknown 43.9
2007 Male, age 72, unknown 37.5
Red nucleus
nTPM: 67.5
2725 Female, age 75, unknown 86.4
1954 Female, age 42, unknown 81.4
1865 Male, age 51, unknown 80.9
2823 Male, age 76, right hemisphere 76.2
2227 Male, age 72, unknown 76.0
2769 Male, age 72, unknown 75.5
2503 Female, age 72, unknown 74.6
1904 Male, age 53, unknown 63.8
1821 Female, age 72, unknown 62.5
2785 Male, age 18, unknown 50.7
2584 Male, age 75, left hemisphere 42.7
2588 Male, age 74, left hemisphere 38.9
Substantia nigra
nTPM: 64.8
2699 Male, age 18, unknown 116.4
2583 Male, age 75, right hemisphere 70.7
1889 Female, age 72, unknown 69.3
1916 Female, age 42, unknown 68.3
1851 Male, age 51, unknown 68.2
2590 Female, age 75, unknown 65.6
1941 Male, age 53, unknown 55.7
2241 Male, age 72, unknown 48.0
2665 Male, age 74, both hemispheres 45.6
2409 Female, age 72, unknown 39.9
Superior colliculus
nTPM: 71.4
1995 Male, age 72, unknown 105.7
1796 Male, age 53, unknown 92.2
1913 Female, age 42, unknown 85.0
2587 Male, age 74, left hemisphere 76.4
2664 Male, age 75, both hemispheres 70.1
2087 Female, age 72, unknown 63.0
1839 Male, age 51, unknown 60.4
2261 Male, age 18, unknown 55.2
1895 Male, age 76, right hemisphere 54.2
2668 Female, age 75, unknown 51.7
Ventral tegmental area
nTPM: 69.0
2223 Female, age 72, unknown 79.2
1942 Male, age 51, unknown 74.1
1915 Female, age 42, unknown 71.8
2021 Male, age 53, unknown 68.9
2218 Male, age 76, both hemispheres 64.6
2410 Female, age 72, unknown 55.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.9
Samples: 139

Max nTPM: 180.2
Min nTPM: 18.8
Std nTPM: 28.4
Median nTPM: 71.5
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 180.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 176.9
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 137.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 124.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 123.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 123.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 122.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 120.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 117.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 114.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 113.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 127.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.5
FF:10158-103A5 76 years, female 127.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 77.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 77.4
Samples: 4

Max nTPM: 96.6
Min nTPM: 69.7
Sample A Female 69.7
Sample B Female 72.5
Sample C Male 70.9
Sample D Male 96.6
Midbrain
nTPM: 75.6
Samples: 4

Max nTPM: 123.5
Min nTPM: 29.0
Sample A Female 123.5
Sample B Female 47.4
Sample C Male 102.5
Sample D Male 29.0
Periaqueductal gray
nTPM: 57.8
Samples: 3

Max nTPM: 68.8
Min nTPM: 45.6
Sample B Female 45.6
Sample C Male 68.8
Sample D Male 59.1
Superior colliculi
nTPM: 76.9
Samples: 4

Max nTPM: 109.8
Min nTPM: 60.0
Sample A Female 60.0
Sample B Female 66.6
Sample C Male 109.8
Sample D Male 71.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 148.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 148.0
Samples: 4

Max nTPM: 156.5
Min nTPM: 141.4
Sample A Male 156.5
Sample B Male 141.4
Sample C Female 149.1
Sample D Female 145.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.8
71836806 Antisense, RP_051017_02_A11, Mouse strain C57BL/6J (56 days, male) 2.4
413825 Antisense, RP_040809_01_G11, Mouse strain C57BL/6J (56 days, male) 1.2

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