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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:124.6 nTPM
HPA Brain:176.2 nTPM
GTEx:124.6 nTPM
FANTOM5:81.2 Scaled Tags Per Million
Pig:138.7 nTPM
Mouse:195.8 nTPM
Allen mouse:6.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

176.2
Sample id Sample description nTPM
Amygdala
nTPM: 142.8
2814 Male, age 76, right hemisphere 181.7
2517 Female, age 94, left hemisphere 171.9
1987 Female, age 91, left hemisphere 165.3
2695 Female, age 67, right hemisphere 107.8
2514 Male, age 75, right hemisphere 87.4
Basal amygdala
nTPM: 163.1
2685 Female, age 94, left hemisphere 251.0
2110 Male, age 80, left hemisphere 185.2
1955 Male, age 76, both hemispheres 150.0
2243 Female, age 91, right hemisphere 138.6
2827 Female, age 67, right hemisphere 134.8
2609 Male, age 75, right hemisphere 118.9
Central amygdala
nTPM: 176.2
1905 Male, age 76, both hemispheres 220.9
2701 Female, age 91, right hemisphere 206.2
2239 Male, age 80, left hemisphere 172.0
2515 Male, age 75, right hemisphere 154.1
2826 Female, age 94, left hemisphere 127.8
Corticomedial amygdala
nTPM: 164.8
2535 Female, age 67, right hemisphere 239.5
2242 Female, age 91, right hemisphere 210.0
2429 Female, age 94, left hemisphere 158.8
2240 Male, age 76, both hemispheres 138.2
2829 Male, age 80, left hemisphere 131.5
2428 Male, age 75, right hemisphere 110.8
Lateral amygdala
nTPM: 127.7
1883 Male, age 76, both hemispheres 190.4
2255 Female, age 91, right hemisphere 182.9
2516 Male, age 75, right hemisphere 109.9
2830 Female, age 67, right hemisphere 109.0
2534 Female, age 94, left hemisphere 102.6
2256 Male, age 80, left hemisphere 71.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 124.6
Samples: 152

Max nTPM: 420.4
Min nTPM: 33.7
Std nTPM: 65.5
Median nTPM: 107.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 420.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 405.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 316.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 303.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 285.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 271.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 258.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 257.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 244.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 234.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 229.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 224.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 219.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 219.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 218.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 209.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 204.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 194.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 188.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 186.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 183.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 182.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 182.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 179.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 178.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 171.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 171.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 165.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 163.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 161.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 161.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 159.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 156.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 156.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 154.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 153.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 152.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 151.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 151.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 150.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 150.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 150.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 148.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 147.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 147.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 147.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 145.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 144.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 144.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 139.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 138.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 137.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 135.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 135.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 134.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 134.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 132.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 130.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 125.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 125.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 121.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 119.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 118.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 117.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 117.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 116.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 115.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 114.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 114.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 114.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 113.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 111.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 111.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 109.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 108.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 107.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 107.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 107.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 107.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 106.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 105.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 104.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 104.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 104.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 102.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 101.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 100.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 100.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 100.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 100.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 100.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 99.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 99.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 98.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 95.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 95.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 94.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 92.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 92.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 91.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 90.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 90.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 89.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 88.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 86.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 85.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 84.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 83.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 83.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 82.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 82.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 81.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 80.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 79.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 79.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 79.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 78.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 77.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 77.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 76.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 75.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 75.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 72.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 69.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 68.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 66.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 66.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 66.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 66.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 65.9
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 65.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 64.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 63.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 63.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 61.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 59.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 58.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 58.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 58.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 57.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 56.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 54.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 53.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 52.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 52.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 51.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 50.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 47.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 44.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 36.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 35.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 33.7
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

81.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 81.2
FF:10151-102I7 76 years, female 81.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.7
Pig sample Sample description nTPM
Amygdala
nTPM: 138.7
Samples: 4

Max nTPM: 187.7
Min nTPM: 70.3
Sample A Female 182.8
Sample B Female 70.3
Sample C Male 114.0
Sample D Male 187.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

195.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 195.8
Samples: 4

Max nTPM: 250.4
Min nTPM: 129.6
Sample A Male 250.4
Sample B Male 195.0
Sample C Female 129.6
Sample D Female 208.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.0
74581395 Antisense, RP_060117_02_C04, Mouse strain C57BL/6J (56 days, male) 7.5
69080026 Antisense, RP_050324_01_E04, Mouse strain C57BL/6J (56 days, male) 4.5

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