MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.9 nTPM
HPA Brain:135.6 nTPM
GTEx:64.9 nTPM
FANTOM5:97.1 Scaled Tags Per Million
Pig:301.0 nTPM
Mouse:225.5 nTPM
Allen mouse:8.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 135.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.2
2219 Male, age 76, both hemispheres 146.5
2411 Female, age 72, unknown 121.6
2586 Male, age 75, left hemisphere 120.0
2666 Male, age 74, left hemisphere 109.5
1827 Male, age 72, unknown 108.5
2019 Male, age 18, unknown 105.9
1870 Female, age 42, unknown 98.1
1833 Male, age 53, unknown 95.4
1830 Male, age 51, unknown 89.0
2828 Female, age 72, unknown 87.7
Dorsal raphe nucleus
nTPM: 110.7
2298 Female, age 72, unknown 121.9
1828 Male, age 53, unknown 121.7
2047 Male, age 72, unknown 118.3
2750 Male, age 76, both hemispheres 110.6
2016 Female, age 72, unknown 80.8
Inferior colliculus
nTPM: 96.4
2097 Female, age 72, unknown 109.9
1890 Male, age 53, unknown 96.8
1848 Female, age 42, unknown 95.2
2849 Male, age 72, unknown 83.6
Median raphe nucleus
nTPM: 114.1
2220 Male, age 76, midline 114.1
Periaquaductal grey, anterior
nTPM: 106.9
2502 Female, age 75, unknown 113.2
1947 Male, age 18, unknown 111.0
1795 Male, age 51, unknown 96.4
Periaquaductal grey, dorsal
nTPM: 83.0
1840 Male, age 53, unknown 94.9
2464 Female, age 72, unknown 85.9
1831 Male, age 72, unknown 80.1
2850 Male, age 76, both hemispheres 71.2
Periaquaductal grey, lateral
nTPM: 73.8
2053 Male, age 18, unknown 77.5
2272 Male, age 74, both hemispheres 73.1
2140 Male, age 76, both hemispheres 70.9
Pretectal area
nTPM: 99.7
1816 Male, age 51, unknown 125.0
2007 Male, age 72, unknown 123.7
1817 Female, age 42, unknown 115.4
1944 Female, age 72, unknown 115.0
1815 Male, age 53, unknown 105.7
2667 Female, age 75, unknown 93.5
2825 Male, age 18, unknown 92.3
2224 Female, age 72, unknown 91.9
2407 Male, age 75, both hemispheres 87.7
2316 Male, age 76, right hemisphere 78.1
2273 Male, age 74, both hemispheres 68.8
Red nucleus
nTPM: 102.1
1821 Female, age 72, unknown 134.2
2584 Male, age 75, left hemisphere 115.6
1954 Female, age 42, unknown 102.8
2588 Male, age 74, left hemisphere 102.5
2227 Male, age 72, unknown 101.9
2725 Female, age 75, unknown 101.9
1904 Male, age 53, unknown 98.9
2769 Male, age 72, unknown 97.8
2785 Male, age 18, unknown 96.5
1865 Male, age 51, unknown 96.3
2503 Female, age 72, unknown 93.6
2823 Male, age 76, right hemisphere 82.6
Substantia nigra
nTPM: 135.6
1916 Female, age 42, unknown 199.6
2241 Male, age 72, unknown 159.4
1851 Male, age 51, unknown 155.0
1941 Male, age 53, unknown 134.5
2409 Female, age 72, unknown 131.4
1889 Female, age 72, unknown 122.9
2699 Male, age 18, unknown 121.0
2583 Male, age 75, right hemisphere 117.5
2665 Male, age 74, both hemispheres 109.7
2590 Female, age 75, unknown 105.2
Superior colliculus
nTPM: 92.9
2668 Female, age 75, unknown 114.6
2087 Female, age 72, unknown 106.5
2261 Male, age 18, unknown 104.6
1796 Male, age 53, unknown 94.3
2664 Male, age 75, both hemispheres 94.0
1839 Male, age 51, unknown 93.1
1895 Male, age 76, right hemisphere 88.7
2587 Male, age 74, left hemisphere 87.5
1913 Female, age 42, unknown 78.0
1995 Male, age 72, unknown 67.7
Ventral tegmental area
nTPM: 120.8
2410 Female, age 72, unknown 147.4
1915 Female, age 42, unknown 138.8
2218 Male, age 76, both hemispheres 128.6
1942 Male, age 51, unknown 111.3
2223 Female, age 72, unknown 103.3
2021 Male, age 53, unknown 95.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 64.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.9
Samples: 139

Max nTPM: 151.3
Min nTPM: 31.8
Std nTPM: 22.9
Median nTPM: 56.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 151.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 146.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 132.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 131.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 120.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 115.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 111.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 109.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 107.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 99.5
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 99.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.1
FF:10158-103A5 76 years, female 97.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 301.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 241.0
Samples: 4

Max nTPM: 324.0
Min nTPM: 178.3
Sample A Female 324.0
Sample B Female 191.5
Sample C Male 270.1
Sample D Male 178.3
Midbrain
nTPM: 289.0
Samples: 4

Max nTPM: 336.8
Min nTPM: 260.1
Sample A Female 297.9
Sample B Female 260.1
Sample C Male 336.8
Sample D Male 261.2
Periaqueductal gray
nTPM: 218.1
Samples: 3

Max nTPM: 241.3
Min nTPM: 180.3
Sample B Female 232.6
Sample C Male 241.3
Sample D Male 180.3
Superior colliculi
nTPM: 301.0
Samples: 4

Max nTPM: 347.6
Min nTPM: 236.8
Sample A Female 347.6
Sample B Female 236.8
Sample C Male 337.9
Sample D Male 281.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 225.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 225.5
Samples: 4

Max nTPM: 228.9
Min nTPM: 221.5
Sample A Male 223.2
Sample B Male 228.3
Sample C Female 228.9
Sample D Female 221.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.6
69028402 Antisense, RP_050316_01_C04, Mouse strain C57BL/6J (56 days, male) 8.6

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