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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:182.4 nTPM
HPA Brain:194.0 nTPM
GTEx:182.4 nTPM
FANTOM5:168.8 Scaled Tags Per Million
Pig:135.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

194.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 120.8
2565 Male, age 75, midline 155.9
2816 Male, age 47, midline 130.4
2048 Male, age 55, midline 115.3
2194 Female, age 79, both hemispheres 102.9
1981 Female, age 72, midline 99.7
Cervical spinal cord, dorsal horn
nTPM: 101.5
2296 Male, age 66, both hemispheres 166.7
2173 Female, age 72, unknown 135.7
2069 Male, age 47, both hemispheres 104.7
1877 Male, age 55, unknown 88.3
2297 Male, age 75, both hemispheres 60.5
2721 Male, age 90, both hemispheres 52.8
Cervical spinal cord, ventral horn
nTPM: 194.0
2480 Male, age 75, both hemispheres 400.9
2809 Male, age 90, both hemispheres 243.9
2295 Male, age 66, both hemispheres 163.3
2820 Female, age 79, both hemispheres 136.9
2068 Male, age 55, unknown 111.6
2098 Female, age 72, unknown 107.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 182.4
Samples: 159

Max nTPM: 625.0
Min nTPM: 30.9
Std nTPM: 97.7
Median nTPM: 164.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 625.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 559.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 502.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 426.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 410.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 396.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 378.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 378.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 372.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 371.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 358.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 355.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 350.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 345.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 337.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 336.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 322.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 304.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 288.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 283.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 276.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 275.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 275.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 274.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 266.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 262.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 251.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 251.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 249.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 249.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 243.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 241.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 235.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 232.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 232.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 227.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 224.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 224.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 222.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 220.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 219.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 219.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 219.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 216.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 214.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 214.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 213.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 212.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 207.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 200.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 194.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 194.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 187.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 186.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 184.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 183.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 183.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 182.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 182.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 181.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 179.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 178.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 175.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 175.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 174.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 173.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 173.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 173.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 172.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 172.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 170.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 168.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 168.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 167.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 167.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 165.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 165.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 165.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 165.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 164.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 164.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 160.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 157.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 156.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 155.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 153.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 151.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 150.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 149.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 148.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 148.2
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 147.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 147.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 146.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 144.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 142.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 140.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 139.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 139.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 137.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 136.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 135.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 135.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 133.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 133.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 132.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 130.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 129.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 129.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 127.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 126.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 125.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 124.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 124.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 123.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 123.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 121.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 119.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 119.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 118.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 118.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 116.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 114.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 113.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 113.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 109.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 106.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 106.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 104.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 102.1
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 98.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 98.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 97.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 96.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 93.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 91.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 90.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 89.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 88.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 88.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 87.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 87.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 87.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 87.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 87.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 83.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 82.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 81.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 80.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 79.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 73.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 72.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 71.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 67.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 63.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 53.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 50.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 50.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 30.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

168.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 168.8
FF:10159-103A6 76 years, female 173.0
FF:10181-103D1 60 years, female 164.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

135.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 110.6
Samples: 4

Max nTPM: 123.1
Min nTPM: 92.7
Sample A Female 121.4
Sample B Female 123.1
Sample C Male 92.7
Sample D Male 105.2
Ventral spinal cord
nTPM: 135.5
Samples: 4

Max nTPM: 167.4
Min nTPM: 97.8
Sample A Female 146.1
Sample B Female 130.7
Sample C Male 97.8
Sample D Male 167.4

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