MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.2 nTPM
HPA Brain:121.1 nTPM
GTEx:77.2 nTPM
FANTOM5:124.6 Scaled Tags Per Million
Pig:115.3 nTPM
Mouse:60.6 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 121.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.1
2586 Male, age 75, left hemisphere 128.8
2666 Male, age 74, left hemisphere 120.5
2019 Male, age 18, unknown 115.6
1830 Male, age 51, unknown 110.5
1870 Female, age 42, unknown 107.3
2411 Female, age 72, unknown 101.4
1833 Male, age 53, unknown 98.0
2828 Female, age 72, unknown 94.3
1827 Male, age 72, unknown 77.9
2219 Male, age 76, both hemispheres 76.5
Dorsal raphe nucleus
nTPM: 81.4
2750 Male, age 76, both hemispheres 102.6
2016 Female, age 72, unknown 88.5
1828 Male, age 53, unknown 80.4
2047 Male, age 72, unknown 75.2
2298 Female, age 72, unknown 60.3
Inferior colliculus
nTPM: 72.1
1890 Male, age 53, unknown 83.0
1848 Female, age 42, unknown 77.6
2849 Male, age 72, unknown 66.9
2097 Female, age 72, unknown 61.0
Median raphe nucleus
nTPM: 78.5
2220 Male, age 76, midline 78.5
Periaquaductal grey, anterior
nTPM: 71.8
1947 Male, age 18, unknown 76.5
2502 Female, age 75, unknown 69.9
1795 Male, age 51, unknown 69.1
Periaquaductal grey, dorsal
nTPM: 71.2
1831 Male, age 72, unknown 78.4
2850 Male, age 76, both hemispheres 75.0
2464 Female, age 72, unknown 70.6
1840 Male, age 53, unknown 60.7
Periaquaductal grey, lateral
nTPM: 72.4
2053 Male, age 18, unknown 84.0
2140 Male, age 76, both hemispheres 68.2
2272 Male, age 74, both hemispheres 64.9
Pretectal area
nTPM: 79.9
1815 Male, age 53, unknown 97.2
2007 Male, age 72, unknown 96.5
2407 Male, age 75, both hemispheres 96.2
1817 Female, age 42, unknown 85.5
1816 Male, age 51, unknown 82.0
2316 Male, age 76, right hemisphere 81.1
1944 Female, age 72, unknown 80.2
2825 Male, age 18, unknown 75.4
2273 Male, age 74, both hemispheres 71.1
2224 Female, age 72, unknown 64.5
2667 Female, age 75, unknown 49.7
Red nucleus
nTPM: 121.1
2588 Male, age 74, left hemisphere 157.8
1865 Male, age 51, unknown 135.3
2584 Male, age 75, left hemisphere 130.9
2503 Female, age 72, unknown 126.0
1904 Male, age 53, unknown 125.8
2227 Male, age 72, unknown 120.1
2769 Male, age 72, unknown 118.9
1954 Female, age 42, unknown 118.3
1821 Female, age 72, unknown 117.6
2785 Male, age 18, unknown 110.1
2725 Female, age 75, unknown 99.2
2823 Male, age 76, right hemisphere 93.4
Substantia nigra
nTPM: 92.8
2583 Male, age 75, right hemisphere 114.2
2665 Male, age 74, both hemispheres 112.3
2590 Female, age 75, unknown 105.8
2241 Male, age 72, unknown 92.9
1851 Male, age 51, unknown 92.7
1889 Female, age 72, unknown 91.8
1941 Male, age 53, unknown 89.7
2409 Female, age 72, unknown 76.8
2699 Male, age 18, unknown 76.1
1916 Female, age 42, unknown 75.4
Superior colliculus
nTPM: 90.9
2668 Female, age 75, unknown 150.5
2587 Male, age 74, left hemisphere 104.4
1913 Female, age 42, unknown 98.2
1995 Male, age 72, unknown 96.7
2261 Male, age 18, unknown 85.8
2087 Female, age 72, unknown 80.1
1839 Male, age 51, unknown 79.7
2664 Male, age 75, both hemispheres 79.3
1796 Male, age 53, unknown 72.4
1895 Male, age 76, right hemisphere 62.2
Ventral tegmental area
nTPM: 93.8
2223 Female, age 72, unknown 135.7
2021 Male, age 53, unknown 92.6
2410 Female, age 72, unknown 90.3
1942 Male, age 51, unknown 82.4
2218 Male, age 76, both hemispheres 81.2
1915 Female, age 42, unknown 80.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 77.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.2
Samples: 139

Max nTPM: 227.2
Min nTPM: 20.3
Std nTPM: 49.5
Median nTPM: 65.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 227.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 211.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 209.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 207.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 195.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 192.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 189.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 185.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 179.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 173.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 172.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 124.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 124.6
FF:10158-103A5 76 years, female 124.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 115.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 101.4
Samples: 4

Max nTPM: 150.3
Min nTPM: 65.7
Sample A Female 106.6
Sample B Female 65.7
Sample C Male 83.1
Sample D Male 150.3
Midbrain
nTPM: 115.4
Samples: 4

Max nTPM: 223.5
Min nTPM: 62.4
Sample A Female 223.5
Sample B Female 108.1
Sample C Male 67.4
Sample D Male 62.4
Periaqueductal gray
nTPM: 67.6
Samples: 3

Max nTPM: 80.6
Min nTPM: 53.5
Sample B Female 80.6
Sample C Male 53.5
Sample D Male 68.8
Superior colliculi
nTPM: 78.3
Samples: 4

Max nTPM: 96.3
Min nTPM: 49.4
Sample A Female 79.4
Sample B Female 49.4
Sample C Male 88.1
Sample D Male 96.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 60.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.6
Samples: 4

Max nTPM: 65.5
Min nTPM: 58.2
Sample A Male 58.6
Sample B Male 58.2
Sample C Female 60.2
Sample D Female 65.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
75990672 Antisense, RP_060608_01_E11, Mouse strain C57BL/6J (56 days, male) 2.3

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