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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average pTPM
284.7
Number of samples
362
Samples
Sample
Description
pTPM
TCGA-DD-A73C-01A
65 years, female, white, stage:Stage IIIA, alive, 701 days
1353.4
TCGA-DD-AACV-01A
53 years, male, asian, stage:Stage I, alive, 1531 days
856.3
TCGA-RC-A7SB-01A
53 years, male, asian, stage:Stage II, alive, 588 days
815.8
TCGA-2Y-A9GT-01A
51 years, male, white, stage:Stage I, dead, 1624 days
800.8
TCGA-DD-A11C-01A
69 years, male, white, stage:Stage I, alive, 662 days
788.6
TCGA-DD-AAE2-01A
51 years, male, asian, stage:Stage I, alive, 638 days
788.5
TCGA-BC-A10Z-01A
62 years, female, white, stage:Stage I, dead, 34 days
724.8
TCGA-DD-A4NL-01A
46 years, male, white, stage:Stage I, alive, 1711 days
716.9
TCGA-EP-A12J-01A
62 years, male, black or african american, stage:Stage I, alive, 570 days
716.0
TCGA-DD-A4NK-01A
80 years, female, white, stage:Stage IIIA, dead, 1210 days
714.3
TCGA-G3-A6UC-01A
65 years, male, white, stage:Stage IIIB, alive, 671 days
669.0
TCGA-XR-A8TD-01A
49 years, female, white, stage:Stage IIIB, alive, 1030 days
667.2
TCGA-GJ-A9DB-01A
68 years, male, white, stage:Stage I, dead, 67 days
666.3
TCGA-BC-A10T-01A
76 years, male, white, stage:'--, dead, 837 days
662.2
TCGA-NI-A4U2-01A
71 years, male, white, stage:Stage IIIA, dead, 1791 days
660.4
TCGA-PD-A5DF-01A
58 years, female, white, stage:Stage IIIB, dead, 639 days
656.4
TCGA-DD-A1EB-01A
72 years, female, stage:Stage I, alive, 2017 days
648.7
TCGA-DD-AADG-01A
70 years, male, asian, stage:Stage IIIA, alive, 1145 days
637.3
TCGA-DD-A4NE-01A
75 years, female, white, stage:Stage IIIA, dead, 660 days
624.0
TCGA-G3-A5SI-01A
44 years, male, asian, stage:Stage II, dead, 768 days
615.2
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:Stage I, alive, 1452 days
613.0
TCGA-ZS-A9CE-01A
79 years, female, white, stage:Stage II, alive, 1241 days
608.1
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:Stage II, alive, 94 days
602.1
TCGA-NI-A8LF-01A
74 years, male, white, stage:Stage I, alive, 799 days
601.4
TCGA-4R-AA8I-01A
66 years, male, white, stage:Stage II, dead, 262 days
600.0
TCGA-DD-AAW1-01A
55 years, male, asian, stage:Stage IIIA, alive, 1989 days
595.7
TCGA-DD-AADL-01A
58 years, male, asian, stage:Stage I, alive, 636 days
575.4
TCGA-UB-A7MB-01A
24 years, male, white, stage:Stage II, alive, 601 days
569.0
TCGA-ZP-A9D4-01A
64 years, female, white, stage:'--, alive, 395 days
566.1
TCGA-BC-A10W-01A
50 years, male, asian, stage:'--, dead, 91 days
564.9
TCGA-2Y-A9H9-01A
70 years, male, white, stage:Stage I, alive, 697 days
561.8
TCGA-ZS-A9CF-01A
64 years, male, white, stage:Stage II, alive, 2412 days
550.1
TCGA-ED-A7XO-01A
29 years, male, asian, stage:Stage IIIA, alive, 427 days
541.6
TCGA-2Y-A9GV-01A
54 years, female, white, stage:Stage I, dead, 2532 days
536.4
TCGA-DD-A3A2-01A
76 years, female, white, stage:Stage I, dead, 2131 days
534.4
TCGA-WJ-A86L-01A
68 years, female, white, stage:Stage I, alive, 345 days
533.0
TCGA-DD-A11D-01A
57 years, female, white, stage:Stage I, dead, 1560 days
528.1
TCGA-BC-A10Y-01A
76 years, male, white, stage:'--, dead, 711 days
527.6
TCGA-DD-AAD8-01A
73 years, female, asian, stage:Stage I, alive, 1219 days
511.8
TCGA-BC-A216-01A
62 years, female, white, stage:Stage IIIA, alive, 1351 days
509.7
TCGA-DD-AAW0-01A
54 years, male, asian, stage:Stage I, alive, 2015 days
503.1
TCGA-DD-A115-01A
53 years, male, white, stage:Stage IIIA, dead, 2542 days
499.2
TCGA-XR-A8TF-01A
74 years, male, white, stage:Stage I, dead, 693 days
498.4
TCGA-CC-A7IH-01A
58 years, male, asian, stage:Stage IIIA, alive, 365 days
488.5
TCGA-DD-AAEE-01A
55 years, male, asian, stage:Stage I, alive, 810 days
487.0
TCGA-DD-AACS-01A
39 years, male, asian, stage:Stage I, alive, 1804 days
481.2
TCGA-DD-A4NV-01A
61 years, male, white, stage:Stage IIIA, alive, 2398 days
480.2
TCGA-ED-A459-01A
47 years, male, asian, stage:Stage II, alive, 910 days
476.2
TCGA-XR-A8TG-01A
58 years, male, white, stage:Stage I, alive, 898 days
475.4
TCGA-2Y-A9HA-01A
70 years, male, white, stage:Stage II, dead, 36 days
473.6
TCGA-G3-A5SK-01A
58 years, male, white, stage:Stage I, alive, 744 days
471.1
TCGA-2Y-A9HB-01A
66 years, male, stage:Stage I, alive, 260 days
470.5
TCGA-DD-A4NP-01A
32 years, male, white, stage:Stage I, alive, 3308 days
468.8
TCGA-DD-A4NI-01A
67 years, male, white, stage:Stage II, alive, 816 days
467.9
TCGA-DD-AADV-01A
50 years, male, asian, stage:Stage I, alive, 574 days
466.1
TCGA-ED-A97K-01A
54 years, male, asian, stage:Stage IIIA, alive, 6 days
458.7
TCGA-DD-A1EA-01A
68 years, male, asian, stage:Stage II, alive, 2415 days
458.3
TCGA-G3-A7M8-01A
31 years, male, asian, stage:Stage I, alive, 430 days
452.8
TCGA-G3-A25U-01A
63 years, female, asian, stage:Stage I, alive, 1636 days
446.3
TCGA-DD-A3A5-01A
66 years, female, white, stage:Stage III, dead, 3125 days
445.7
TCGA-ZP-A9CY-01A
66 years, female, white, stage:'--, alive, 782 days
433.6
TCGA-FV-A3R2-01A
75 years, male, white, stage:Stage I, dead, 194 days
431.0
TCGA-DD-AAEH-01A
73 years, male, asian, stage:Stage I, alive, 784 days
423.7
TCGA-G3-AAV4-01A
83 years, female, white, stage:Stage I, dead, 27 days
422.8
TCGA-MR-A520-01A
58 years, male, white, stage:Stage I, alive, 229 days
422.6
TCGA-G3-AAV2-01A
50 years, male, white, stage:Stage I, alive, 372 days
422.4
TCGA-DD-AAVX-01A
38 years, male, asian, stage:Stage II, alive, 1718 days
421.3
TCGA-2Y-A9GS-01A
58 years, male, white, stage:'--, dead, 724 days
420.7
TCGA-DD-A73F-01A
77 years, female, white, stage:Stage I, alive, 1085 days
418.0
TCGA-LG-A9QD-01A
68 years, male, white, stage:Stage IIIA, alive, 366 days
415.6
TCGA-DD-A4NJ-01A
54 years, female, white, stage:Stage II, alive, 928 days
415.6
TCGA-EP-A26S-01A
70 years, male, white, stage:Stage I, alive, 608 days
415.4
TCGA-ZS-A9CG-01A
55 years, male, white, stage:Stage II, alive, 341 days
411.2
TCGA-DD-AACE-01A
62 years, male, asian, stage:Stage I, alive, 2184 days
408.9
TCGA-RC-A7SK-01A
59 years, male, asian, stage:Stage I, alive, 472 days
408.6
TCGA-HP-A5N0-01A
90 years, female, stage:'--, dead, 752 days
404.4
TCGA-ED-A4XI-01A
58 years, male, asian, stage:Stage II, alive, 819 days
402.7
TCGA-K7-A5RF-01A
64 years, male, white, stage:Stage I, alive, 631 days
402.1
TCGA-BC-A5W4-01A
69 years, male, white, stage:Stage IIIA, dead, 547 days
401.5
TCGA-BC-A217-01A
75 years, female, white, stage:Stage II, dead, 1397 days
394.8
TCGA-FV-A2QR-01A
75 years, male, white, stage:Stage I, dead, 581 days
394.2
TCGA-DD-AADR-01A
58 years, male, asian, stage:Stage I, alive, 2028 days
392.8
TCGA-G3-A3CK-01A
61 years, male, asian, stage:Stage I, alive, 585 days
392.0
TCGA-DD-A3A8-01A
75 years, male, white, stage:Stage II, dead, 11 days
386.8
TCGA-T1-A6J8-01A
68 years, male, white, stage:'--, alive, 23 days
386.7
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:Stage II, dead, 848 days
382.1
TCGA-BC-A10X-01A
52 years, female, white, stage:Stage IIIA, dead, 770 days
381.7
TCGA-BC-A3KF-01A
66 years, female, white, stage:Stage I, alive, 8 days
379.2
TCGA-DD-AAEA-01A
65 years, male, asian, stage:Stage I, alive, 575 days
378.8
TCGA-K7-A6G5-01A
66 years, male, white, stage:Stage I, alive, 512 days
378.3
TCGA-CC-A5UE-01A
48 years, male, asian, stage:Stage IIIB, dead, 272 days
374.8
TCGA-DD-AADQ-01A
59 years, male, asian, stage:Stage II, alive, 436 days
374.7
TCGA-5R-AAAM-01A
65 years, female, white, stage:Stage II, dead, 46 days
374.6
TCGA-WX-AA46-01A
61 years, male, white, stage:Stage II, alive, 756 days
374.6
TCGA-RC-A6M4-01A
74 years, female, white, stage:Stage IIIA, alive, 22 days
374.1
TCGA-CC-A7IK-01A
59 years, male, asian, stage:Stage IIIA, dead, 262 days
372.2
TCGA-DD-A73D-01A
68 years, female, white, stage:Stage II, alive, 693 days
369.3
TCGA-DD-AADF-01A
64 years, female, asian, stage:Stage I, dead, 115 days
368.7
TCGA-G3-AAV7-01A
38 years, male, asian, stage:Stage II, alive, 361 days
368.7
TCGA-ZP-A9CV-01A
59 years, male, white, stage:'--, dead, 1088 days
367.7
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:Stage IIIA, alive, 20 days
367.4
TCGA-DD-AADP-01A
45 years, male, asian, stage:Stage I, alive, 458 days
367.0
TCGA-DD-A73A-01A
71 years, male, white, stage:Stage I, alive, 728 days
365.8
TCGA-G3-A5SL-01A
70 years, male, white, stage:Stage II, alive, 621 days
363.3
TCGA-BD-A2L6-01A
69 years, male, white, stage:'--, alive, 1363 days
362.9
TCGA-CC-5264-01A
71 years, male, asian, stage:Stage IIIA, dead, 102 days
361.1
TCGA-5R-AA1C-01A
57 years, male, white, stage:Stage II, alive, 520 days
359.3
TCGA-DD-AAW2-01A
69 years, male, asian, stage:Stage I, alive, 1855 days
357.6
TCGA-BC-A3KG-01A
68 years, female, white, stage:Stage II, alive, 680 days
354.1
TCGA-DD-AACA-01A
65 years, male, asian, stage:Stage I, alive, 2301 days
353.6
TCGA-DD-AADD-01A
51 years, male, asian, stage:Stage I, alive, 1231 days
352.3
TCGA-UB-AA0U-01A
60 years, male, white, stage:Stage II, alive, 327 days
347.9
TCGA-DD-A1EJ-01A
71 years, female, white, stage:Stage IIIC, dead, 1005 days
344.9
TCGA-G3-A3CH-01A
53 years, male, asian, stage:Stage IIIA, alive, 780 days
344.0
TCGA-DD-AAVY-01A
56 years, male, asian, stage:Stage IIIA, alive, 1970 days
339.3
TCGA-MI-A75I-01A
61 years, male, black or african american, stage:'--, alive, 630 days
336.8
TCGA-DD-AAW3-01A
69 years, male, asian, stage:Stage I, alive, 1633 days
332.7
TCGA-DD-A1EK-01A
64 years, female, white, stage:Stage IVB, dead, 558 days
331.8
TCGA-UB-AA0V-01A
69 years, female, white, stage:Stage I, alive, 314 days
330.2
TCGA-DD-AACX-01A
66 years, male, asian, stage:Stage II, alive, 170 days
327.5
TCGA-CC-5263-01A
35 years, male, asian, stage:Stage IIIA, dead, 129 days
327.2
TCGA-DD-AACK-01A
70 years, male, asian, stage:Stage I, alive, 9 days
323.5
TCGA-DD-AAD3-01A
43 years, male, asian, stage:Stage I, alive, 1295 days
320.2
TCGA-DD-A11B-01A
73 years, male, white, stage:Stage I, dead, 14 days
315.2
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:Stage I, dead, 52 days
315.1
TCGA-2Y-A9GU-01A
55 years, female, white, stage:Stage I, alive, 1939 days
314.8
TCGA-DD-AAE9-01A
69 years, male, asian, stage:Stage I, alive, 722 days
312.7
TCGA-ZP-A9D2-01A
51 years, male, white, stage:'--, dead, 765 days
312.0
TCGA-G3-A5SJ-01A
59 years, male, white, stage:Stage I, alive, 698 days
311.6
TCGA-DD-AADC-01A
53 years, male, asian, stage:Stage I, dead, 425 days
308.0
TCGA-DD-A1EF-01A
57 years, female, white, stage:Stage I, dead, 394 days
307.9
TCGA-MI-A75H-01A
77 years, male, white, stage:'--, alive, 747 days
306.3
TCGA-2Y-A9H2-01A
64 years, female, white, stage:Stage I, alive, 1731 days
305.9
TCGA-DD-AAD0-01A
73 years, female, asian, stage:Stage I, alive, 137 days
305.3
TCGA-BC-A110-01A
51 years, female, black or african american, stage:'--, dead, 2116 days
305.2
TCGA-BC-A69I-01A
69 years, male, white, stage:Stage I, alive, 387 days
304.4
TCGA-DD-A73B-01A
72 years, female, white, stage:Stage I, dead, 283 days
302.6
TCGA-KR-A7K0-01A
65 years, male, white, stage:Stage I, dead, 65 days
302.6
TCGA-LG-A9QC-01A
48 years, male, white, stage:Stage I, alive, 425 days
300.7
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:Stage I, alive, 519 days
297.4
TCGA-2Y-A9GX-01A
68 years, male, white, stage:Stage I, alive, 2442 days
295.9
TCGA-G3-A3CI-01A
71 years, male, white, stage:Stage I, alive, 180 days
295.8
TCGA-CC-A7IF-01A
59 years, male, asian, stage:Stage IIIA, dead, 649 days
294.3
TCGA-G3-AAV0-01A
58 years, male, asian, stage:Stage I, alive, 476 days
294.2
TCGA-BC-A10R-01A
66 years, female, white, stage:'--, dead, 308 days
293.3
TCGA-G3-AAV1-01A
51 years, male, asian, stage:Stage IIIC, dead, 359 days
292.9
TCGA-DD-A1EI-01A
46 years, male, asian, stage:Stage I, alive, 183 days
292.6
TCGA-ED-A627-01A
74 years, male, white, stage:Stage I, alive, 423 days
291.0
TCGA-DD-A4NB-01A
25 years, male, white, stage:Stage I, alive, 989 days
290.7
TCGA-CC-A9FS-01A
55 years, male, asian, stage:Stage II, alive, 211 days
289.3
TCGA-DD-AACQ-01A
50 years, male, asian, stage:Stage II, dead, 432 days
282.7
TCGA-G3-A5SM-01A
58 years, male, white, stage:Stage II, alive, 520 days
281.8
TCGA-FV-A3I1-01A
81 years, female, white, stage:Stage II, dead, 247 days
279.4
TCGA-DD-A4NF-01A
72 years, male, white, stage:Stage I, alive, 942 days
278.8
TCGA-DD-AACF-01A
68 years, male, asian, stage:Stage I, dead, 365 days
276.9
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
276.0
TCGA-DD-A3A1-01A
65 years, male, stage:Stage IIIA, dead, 233 days
275.6
TCGA-DD-AAEG-01A
59 years, female, asian, stage:Stage I, alive, 719 days
274.8
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:Stage II, dead, 415 days
273.9
TCGA-DD-A4NQ-01A
60 years, male, white, stage:Stage II, dead, 373 days
270.3
TCGA-CC-A7IL-01A
61 years, male, asian, stage:Stage IIIA, dead, 278 days
269.8
TCGA-XR-A8TE-01A
16 years, male, white, stage:Stage IIIA, alive, 925 days
267.9
TCGA-DD-A3A4-01A
37 years, male, white, stage:Stage IIIA, dead, 612 days
266.6
TCGA-BC-A10U-01A
69 years, male, white, stage:'--, dead, 837 days
265.1
TCGA-G3-A25V-01A
68 years, male, white, stage:Stage I, alive, 860 days
264.9
TCGA-DD-AADU-01A
60 years, male, asian, stage:Stage II, alive, 554 days
264.2
TCGA-DD-A39W-01A
29 years, female, white, stage:Stage III, dead, 827 days
263.7
TCGA-GJ-A6C0-01A
75 years, female, white, stage:Stage II, dead, 31 days
263.3
TCGA-DD-A4ND-01A
56 years, female, white, stage:Stage I, alive, 2746 days
262.6
TCGA-DD-A4NO-01A
65 years, male, white, stage:Stage I, alive, 2245 days
262.1
TCGA-MI-A75G-01A
63 years, male, white, stage:Stage II, alive, 698 days
261.8
TCGA-DD-A73E-01A
66 years, male, white, stage:Stage I, alive, 44 days
258.5
TCGA-ED-A7XP-01A
53 years, female, asian, stage:Stage II, alive, 400 days
256.5
TCGA-G3-A25Z-01A
58 years, male, asian, stage:Stage I, alive, 655 days
255.0
TCGA-CC-A8HU-01A
39 years, female, asian, stage:Stage IIIA, dead, 344 days
253.3
TCGA-DD-A4NS-01A
61 years, female, white, stage:Stage I, dead, 2456 days
251.1
TCGA-G3-AAV3-01A
58 years, female, white, stage:Stage II, alive, 412 days
251.0
TCGA-DD-AAED-01A
51 years, male, asian, stage:Stage I, alive, 763 days
250.8
TCGA-BC-A8YO-01A
66 years, female, white, stage:Stage IIIC, alive, 562 days
250.6
TCGA-DD-A4NA-01A
67 years, female, white, stage:Stage IIIC, alive, 1008 days
249.9
TCGA-DD-AAVR-01A
44 years, male, asian, stage:Stage I, alive, 2513 days
246.0
TCGA-HP-A5MZ-01A
78 years, male, stage:Stage I, dead, 91 days
243.8
TCGA-DD-AAD1-01A
51 years, female, asian, stage:Stage I, alive, 564 days
243.2
TCGA-DD-A1EE-01A
73 years, male, white, stage:Stage IIIA, dead, 349 days
240.5
TCGA-ED-A82E-01A
60 years, female, asian, stage:Stage IIIA, alive, 408 days
240.3
TCGA-DD-AADA-01A
66 years, female, asian, stage:Stage I, alive, 1233 days
237.5
TCGA-DD-AAEK-01A
51 years, male, asian, stage:Stage II, alive, 1067 days
237.1
TCGA-KR-A7K8-01A
57 years, male, stage:Stage I, alive, 906 days
233.6
TCGA-DD-AADY-01A
55 years, female, asian, stage:Stage I, alive, 555 days
233.1
TCGA-UB-A7ME-01A
51 years, male, asian, stage:Stage I, alive, 486 days
232.7
TCGA-BD-A3ER-01A
62 years, male, white, stage:Stage II, alive, 1115 days
229.8
TCGA-DD-AAEI-01A
72 years, male, asian, stage:Stage I, alive, 1531 days
227.3
TCGA-ZS-A9CD-01A
73 years, male, white, stage:Stage II, dead, 1386 days
226.8
TCGA-DD-AACT-01A
69 years, female, asian, stage:Stage I, alive, 1562 days
224.7
TCGA-DD-AACJ-01A
75 years, male, asian, stage:Stage II, alive, 2102 days
223.8
TCGA-DD-AACU-01A
59 years, male, asian, stage:Stage I, alive, 1567 days
223.5
TCGA-DD-AAVP-01A
48 years, male, asian, stage:Stage I, alive, 2752 days
223.2
TCGA-2Y-A9H0-01A
49 years, male, white, stage:Stage IIIA, alive, 3675 days
221.3
TCGA-DD-A114-01A
42 years, male, black or african american, stage:Stage II, dead, 1149 days
220.3
TCGA-DD-AAD2-01A
66 years, male, asian, stage:Stage I, alive, 658 days
219.7
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:Stage IIIB, alive, 396 days
219.4
TCGA-CC-A3MC-01A
54 years, male, asian, stage:Stage IIIA, alive, 363 days
219.1
TCGA-DD-AADK-01A
68 years, female, asian, stage:Stage II, alive, 1049 days
218.4
TCGA-RC-A7SF-01A
66 years, male, asian, stage:Stage I, alive, 579 days
217.7
TCGA-LG-A6GG-01A
79 years, female, white, stage:Stage II, alive, 387 days
216.6
TCGA-FV-A496-01A
84 years, female, white, stage:Stage I, alive, 10 days
216.3
TCGA-MI-A75E-01A
61 years, male, white, stage:Stage IIIC, alive, 507 days
215.4
TCGA-ZP-A9D0-01A
67 years, female, black or african american, stage:'--, alive, 1091 days
214.5
TCGA-FV-A3R3-01A
38 years, female, white, stage:Stage I, dead, 366 days
214.3
TCGA-DD-AAE7-01A
72 years, male, asian, stage:Stage I, alive, 644 days
214.1
TCGA-ZP-A9CZ-01A
72 years, male, asian, stage:'--, alive, 706 days
213.5
TCGA-DD-AAVV-01A
56 years, male, asian, stage:Stage II, alive, 2455 days
213.4
TCGA-WX-AA44-01A
64 years, female, white, stage:Stage I, alive, 615 days
212.7
TCGA-WQ-AB4B-01A
62 years, male, white, stage:Stage II, alive, 395 days
211.5
TCGA-DD-AAC9-01A
51 years, male, asian, stage:Stage I, alive, 347 days
211.4
TCGA-5R-AA1D-01A
17 years, female, white, stage:Stage IIIA, alive, 449 days
211.0
TCGA-DD-A1ED-01A
68 years, male, white, stage:Stage I, alive, 2301 days
210.9
TCGA-ED-A7PX-01A
48 years, female, asian, stage:Stage II, alive, 6 days
210.5
TCGA-G3-A25Y-01A
52 years, female, asian, stage:Stage I, dead, 452 days
210.2
TCGA-G3-A7M6-01A
60 years, female, white, stage:Stage I, alive, 632 days
208.2
TCGA-G3-A3CG-01A
80 years, male, white, stage:Stage I, alive, 673 days
206.4
TCGA-DD-AAE3-01A
50 years, male, asian, stage:Stage I, alive, 566 days
205.7
TCGA-DD-AAE6-01A
59 years, female, asian, stage:Stage I, alive, 141 days
205.0
TCGA-CC-5260-01A
61 years, female, asian, stage:Stage IIIC, dead, 87 days
203.7
TCGA-EP-A3RK-01A
73 years, male, white, stage:Stage IIIA, alive, 363 days
202.5
TCGA-BC-A10S-01A
81 years, male, white, stage:'--, dead, 1423 days
201.1
TCGA-BC-A112-01A
80 years, male, white, stage:'--, dead, 153 days
200.8
TCGA-CC-A8HT-01A
74 years, male, asian, stage:Stage IIIA, dead, 140 days
199.2
TCGA-ED-A7PY-01A
20 years, female, asian, stage:Stage II, alive, 390 days
199.0
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:Stage I, alive, 12 days
197.6
TCGA-CC-A5UD-01A
45 years, male, asian, stage:Stage IIIA, dead, 304 days
197.6
TCGA-5C-AAPD-01A
61 years, male, asian, stage:Stage II, alive, 20 days
196.5
TCGA-DD-AAVW-01A
35 years, male, asian, stage:Stage I, alive, 2317 days
194.9
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:Stage I, dead, 19 days
194.1
TCGA-DD-AACH-01A
69 years, male, asian, stage:Stage II, dead, 195 days
194.0
TCGA-DD-A116-01A
68 years, male, asian, stage:Stage IIIA, dead, 1622 days
193.6
TCGA-UB-A7MC-01A
59 years, male, white, stage:Stage IIIA, alive, 500 days
192.6
TCGA-RC-A7S9-01A
47 years, female, asian, stage:Stage I, alive, 640 days
192.4
TCGA-BD-A3EP-01A
75 years, female, black or african american, stage:Stage I, alive, 409 days
191.8
TCGA-MI-A75C-01A
64 years, male, white, stage:Stage I, alive, 291 days
191.2
TCGA-CC-A3MB-01A
36 years, male, asian, stage:Stage IIIA, dead, 315 days
190.2
TCGA-CC-5261-01A
44 years, male, asian, stage:Stage II, dead, 97 days
188.9
TCGA-DD-A1EG-01A
76 years, male, white, stage:Stage I, dead, 1372 days
186.7
TCGA-CC-A3MA-01A
61 years, male, asian, stage:Stage IIIA, dead, 303 days
185.4
TCGA-DD-AAE4-01A
49 years, female, asian, stage:Stage I, alive, 608 days
185.4
TCGA-G3-AAV5-01A
67 years, male, white, stage:Stage II, alive, 354 days
183.4
TCGA-G3-AAUZ-01A
48 years, male, stage:Stage I, alive, 480 days
182.9
TCGA-DD-AACN-01A
32 years, male, asian, stage:Stage I, alive, 1302 days
182.9
TCGA-G3-A7M5-01A
76 years, male, asian, stage:Stage I, alive, 447 days
182.6
TCGA-DD-AAEB-01A
60 years, male, asian, stage:Stage I, alive, 478 days
182.1
TCGA-DD-AAD6-01A
66 years, male, asian, stage:Stage IIIA, alive, 672 days
181.1
TCGA-RC-A6M6-01A
75 years, male, white, stage:Stage II, alive, 9 days
180.3
TCGA-CC-A8HV-01A
51 years, female, asian, stage:Stage II, dead, 279 days
179.9
TCGA-G3-A7M9-01A
70 years, male, white, stage:Stage IIIB, dead, 56 days
178.4
TCGA-ZP-A9D1-01A
56 years, female, white, stage:'--, alive, 21 days
176.0
TCGA-DD-A118-01A
77 years, female, white, stage:Stage II, alive, 3437 days
175.5
TCGA-CC-A1HT-01A
50 years, male, asian, stage:Stage IIIA, dead, 101 days
175.4
TCGA-CC-A8HS-01A
18 years, male, asian, stage:Stage IIIC, dead, 300 days
174.6
TCGA-5C-A9VH-01A
70 years, male, white, stage:Stage I, alive, 322 days
170.3
TCGA-BC-A10Q-01A
72 years, female, white, stage:'--, dead, 1135 days
169.8
TCGA-DD-AACZ-01A
63 years, female, asian, stage:Stage I, dead, 171 days
169.2
TCGA-DD-A39Y-01A
67 years, male, asian, stage:Stage I, dead, 171 days
169.1
TCGA-XR-A8TC-01A
43 years, female, white, stage:Stage I, alive, 1339 days
168.6
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:Stage I, alive, 1900 days
168.0
TCGA-K7-AAU7-01A
61 years, male, white, stage:Stage II, alive, 359 days
167.6
TCGA-RC-A6M5-01A
20 years, female, white, stage:Stage IVA, alive, 15 days
167.6
TCGA-DD-AADW-01A
48 years, male, asian, stage:Stage I, alive, 587 days
167.0
TCGA-DD-AACY-01A
61 years, male, asian, stage:Stage I, alive, 1450 days
166.4
TCGA-DD-A1EH-01A
23 years, male, white, stage:Stage III, alive, 1495 days
165.3
TCGA-YA-A8S7-01A
68 years, male, white, stage:Stage IIIA, dead, 412 days
164.8
TCGA-2Y-A9H8-01A
85 years, female, white, stage:'--, dead, 633 days
162.1
TCGA-G3-A7M7-01A
65 years, male, white, stage:Stage I, alive, 361 days
161.5
TCGA-CC-A3M9-01A
45 years, male, asian, stage:Stage IIIA, dead, 300 days
159.9
TCGA-FV-A3I0-01A
76 years, female, white, stage:Stage II, alive, 848 days
159.7
TCGA-2Y-A9GW-01A
64 years, male, white, stage:Stage I, dead, 1271 days
159.5
TCGA-DD-AACB-01A
74 years, female, asian, stage:Stage I, alive, 2324 days
158.9
TCGA-DD-AAVS-01A
56 years, male, asian, stage:Stage I, alive, 1823 days
158.8
TCGA-ED-A5KG-01A
60 years, female, asian, stage:Stage II, alive, 854 days
157.2
TCGA-CC-5262-01A
67 years, male, asian, stage:Stage IIIC, dead, 103 days
157.1
TCGA-RC-A7SH-01A
42 years, male, asian, stage:Stage II, alive, 468 days
156.1
TCGA-O8-A75V-01A
54 years, male, stage:Stage I, alive, 538 days
153.6
TCGA-ED-A8O6-01A
50 years, female, asian, stage:Stage IIIA, dead, 56 days
153.6
TCGA-DD-AAE1-01A
52 years, male, asian, stage:Stage I, alive, 552 days
153.3
TCGA-UB-A7MF-01A
56 years, male, white, stage:Stage IIIA, dead, 214 days
151.1
TCGA-ED-A66X-01A
35 years, male, asian, stage:Stage IIIA, alive, 406 days
149.2
TCGA-DD-A113-01A
55 years, female, white, stage:Stage II, alive, 2425 days
147.5
TCGA-2Y-A9H6-01A
68 years, female, white, stage:Stage I, alive, 357 days
147.2
TCGA-DD-A119-01A
40 years, male, asian, stage:Stage IV, dead, 223 days
145.2
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:Stage II, alive, 382 days
144.8
TCGA-ED-A66Y-01A
51 years, female, asian, stage:Stage IIIA, dead, 296 days
144.3
TCGA-DD-AADM-01A
58 years, male, asian, stage:Stage II, dead, 12 days
142.2
TCGA-DD-AACC-01A
61 years, male, asian, stage:Stage I, dead, 1685 days
142.0
TCGA-ED-A8O5-01A
59 years, female, asian, stage:Stage IIIA, alive, 406 days
139.5
TCGA-2Y-A9GY-01A
64 years, female, white, stage:Stage II, dead, 757 days
139.4
TCGA-2Y-A9H5-01A
59 years, female, white, stage:Stage I, dead, 555 days
136.9
TCGA-DD-A39Z-01A
43 years, female, stage:Stage II, dead, 601 days
136.6
TCGA-KR-A7K2-01A
64 years, male, white, stage:Stage I, alive, 829 days
136.6
TCGA-GJ-A3OU-01A
59 years, male, white, stage:Stage I, alive, 879 days
135.4
TCGA-G3-A25T-01A
45 years, female, white, stage:Stage IIIA, alive, 1553 days
135.3
TCGA-DD-AADB-01A
51 years, male, asian, stage:Stage I, alive, 1242 days
133.4
TCGA-FV-A2QQ-01A
80 years, male, white, stage:Stage I, alive, 729 days
132.3
TCGA-WQ-A9G7-01A
71 years, female, white, stage:'--, alive, 30 days
129.9
TCGA-DD-A4NH-01A
65 years, female, white, stage:Stage IIIB, alive, 917 days
128.0
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:Stage II, alive, 6 days
127.8
TCGA-DD-A4NR-01A
85 years, female, white, stage:Stage I, dead, 9 days
126.5
TCGA-CC-A9FW-01A
68 years, male, asian, stage:Stage IIIA, alive, 248 days
122.9
TCGA-FV-A23B-01A
70 years, female, white, stage:Stage II, dead, 1852 days
122.4
TCGA-DD-AA3A-01A
81 years, female, white, stage:Stage I, dead, 410 days
121.4
TCGA-DD-A39X-01A
78 years, female, white, stage:Stage I, dead, 1694 days
118.2
TCGA-EP-A2KA-01A
52 years, female, white, stage:Stage IIIA, dead, 627 days
117.1
TCGA-DD-A1EC-01A
20 years, female, white, stage:Stage I, alive, 602 days
116.7
TCGA-EP-A3JL-01A
76 years, male, white, stage:Stage I, alive, 303 days
113.8
TCGA-DD-AACW-01A
43 years, male, asian, stage:Stage I, alive, 1424 days
112.6
TCGA-G3-A25S-01A
64 years, male, white, stage:Stage I, dead, 416 days
112.4
TCGA-EP-A2KB-01A
46 years, female, white, stage:Stage I, dead, 596 days
108.8
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:Stage II, alive, 1098 days
107.0
TCGA-DD-AAD5-01A
54 years, male, asian, stage:Stage I, alive, 1345 days
106.5
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:Stage I, alive, 2728 days
102.4
TCGA-DD-A3A9-01A
64 years, female, white, stage:Stage IVB, dead, 931 days
102.4
TCGA-DD-A3A3-01A
45 years, male, asian, stage:Stage I, dead, 535 days
101.2
TCGA-CC-5258-01A
48 years, male, asian, stage:Stage II, dead, 129 days
99.8
TCGA-WX-AA47-01A
33 years, female, white, stage:Stage IIIA, dead, 556 days
98.1
TCGA-MR-A8JO-01A
34 years, male, white, stage:Stage I, alive, 330 days
97.8
TCGA-5C-A9VG-01A
58 years, male, white, stage:Stage II, alive, 328 days
97.3
TCGA-2Y-A9H7-01A
81 years, female, white, stage:Stage I, alive, 1168 days
95.3
TCGA-DD-AAC8-01A
72 years, male, asian, stage:Stage I, dead, 16 days
94.6
TCGA-UB-A7MA-01A
62 years, female, white, stage:Stage II, alive, 848 days
89.7
TCGA-CC-A5UC-01A
63 years, male, asian, stage:Stage IIIA, dead, 347 days
89.0
TCGA-DD-A4NG-01A
77 years, male, white, stage:Stage IIIA, dead, 802 days
86.3
TCGA-FV-A495-01A
51 years, female, white, stage:Stage II, alive, 1 days
86.0
TCGA-DD-AAVU-01A
46 years, male, asian, stage:Stage II, alive, 2202 days
83.0
TCGA-DD-AADI-01A
43 years, female, asian, stage:Stage I, alive, 1085 days
82.6
TCGA-DD-AACP-01A
64 years, male, asian, stage:Stage I, alive, 415 days
81.9
TCGA-DD-A4NN-01A
56 years, female, white, stage:Stage I, dead, 899 days
81.9
TCGA-DD-AACL-01A
66 years, female, asian, stage:Stage I, dead, 107 days
80.1
TCGA-DD-AAE0-01A
45 years, female, asian, stage:Stage IIIA, alive, 555 days
79.8
TCGA-CC-A7IG-01A
47 years, male, asian, stage:Stage II, dead, 299 days
79.4
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:Stage I, dead, 438 days
79.2
TCGA-DD-AADJ-01A
70 years, female, asian, stage:Stage I, alive, 1066 days
75.1
TCGA-CC-5259-01A
60 years, female, asian, stage:Stage IIIC, alive, 250 days
72.0
TCGA-DD-AACG-01A
52 years, male, asian, stage:Stage II, dead, 469 days
66.2
TCGA-DD-A39V-01A
77 years, male, white, stage:Stage II, dead, 643 days
64.2
TCGA-G3-AAV6-01A
53 years, female, white, stage:Stage IIIA, dead, 65 days
64.1
TCGA-2Y-A9H1-01A
58 years, male, white, stage:Stage I, dead, 1229 days
62.9
TCGA-CC-A7IE-01A
57 years, male, asian, stage:Stage IIIA, dead, 217 days
61.2
TCGA-DD-AACD-01A
48 years, male, asian, stage:Stage I, dead, 381 days
60.5
TCGA-G3-A25X-01A
73 years, male, asian, stage:Stage II, alive, 1779 days
57.5
TCGA-2Y-A9H3-01A
45 years, male, white, stage:Stage II, alive, 1516 days
54.5
TCGA-ES-A2HS-01A
80 years, male, white, stage:Stage I, dead, 688 days
54.0
TCGA-KR-A7K7-01A
61 years, female, white, stage:Stage II, alive, 951 days
51.3
TCGA-BC-A69H-01A
64 years, male, white, stage:Stage II, alive, 444 days
47.6
TCGA-DD-AACI-01A
69 years, male, asian, stage:Stage II, alive, 1618 days
45.5
TCGA-CC-A7II-01A
54 years, male, asian, stage:Stage IIIA, alive, 399 days
43.9
TCGA-DD-AACO-01A
40 years, male, asian, stage:Stage I, alive, 1876 days
37.6
TCGA-DD-A3A6-01A
72 years, female, white, stage:Stage II, dead, 3258 days
36.4
TCGA-CC-A123-01A
24 years, female, asian, stage:Stage IIIA, alive, 219 days
32.4
TCGA-DD-AADS-01A
63 years, male, asian, stage:Stage I, alive, 474 days
30.8
TCGA-DD-A3A7-01A
67 years, male, stage:Stage IIIB, dead, 419 days
28.8
TCGA-DD-AADN-01A
59 years, male, asian, stage:Stage I, alive, 898 days
22.2
TCGA-DD-A73G-01A
73 years, female, white, stage:Stage I, alive, 3478 days
21.4
TCGA-DD-AADO-01A
55 years, male, asian, stage:Stage I, alive, 453 days
20.6
TCGA-FV-A4ZP-01A
78 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SCP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average pTPM
403.5
Number of samples
231
Samples
Sample
Description
pTPM
DO45125
58 years, male, NA, stage:3, alive, 1680 days
2044.3
DO50832
73 years, male, NA, stage:3, alive, 90 days
1285.3
DO45111
74 years, male, NA, stage:2, alive, 1590 days
1131.1
DO227643
79 years, male, NA, stage:2, alive, 1260 days
1112.7
DO45215
65 years, male, NA, stage:2, alive, 1170 days
1100.6
DO45167
67 years, male, NA, stage:2, dead, 1440 days
1065.6
DO45099
46 years, male, NA, stage:3, alive, 1590 days
1015.7
DO45107
63 years, female, NA, stage:2, alive, 1710 days
1006.9
DO45253
50 years, male, NA, stage:2, alive, 870 days
949.1
DO45237
58 years, male, NA, stage:2, alive, 900 days
940.8
DO23534
60 years, male, NA, stage:2, alive, 840 days
881.7
DO45129
61 years, male, NA, stage:3, alive, 1470 days
874.5
DO45207
68 years, male, NA, stage:1, alive, 1050 days
862.1
DO45101
63 years, male, NA, stage:2, alive, 1680 days
854.3
DO48716
71 years, male, NA, stage:2, alive, 720 days
847.1
DO48746
76 years, male, NA, stage:3, alive, 570 days
838.9
DO45255
81 years, male, NA, stage:3, alive, 720 days
817.9
DO45105
61 years, male, NA, stage:1, alive, 1680 days
816.9
DO45177
81 years, female, NA, stage:3, alive, 1260 days
788.6
DO23544
67 years, male, NA, stage:2, alive, 960 days
778.4
DO45133
64 years, male, NA, stage:3, dead, 660 days
773.3
DO48677
58 years, male, NA, stage:3, alive, 1140 days
769.1
DO45261
74 years, male, NA, stage:3, alive, 990 days
757.8
DO45195
62 years, male, NA, stage:1, alive, 390 days
740.3
DO23532
71 years, female, NA, stage:1, alive, 960 days
731.5
DO50807
67 years, male, NA, stage:1, alive, 540 days
730.2
DO45197
51 years, male, NA, stage:2, alive, 1170 days
727.5
DO50802
49 years, male, NA, stage:2, alive, 930 days
715.0
DO45281
83 years, male, NA, stage:4, alive, 750 days
680.6
DO48672
81 years, male, NA, stage:2, alive, 450 days
677.2
DO45235
68 years, female, NA, stage:1, alive, 900 days
663.2
DO45171
56 years, male, NA, stage:3, alive, 600 days
662.4
DO50813
56 years, male, NA, stage:2, alive, 420 days
658.9
DO45119
74 years, male, NA, stage:3, dead, 510 days
638.3
DO50840
49 years, male, NA, stage:2, alive, 330 days
629.3
DO23546
63 years, male, NA, stage:2, alive, 1050 days
624.7
DO45201
49 years, male, NA, stage:1, alive, 900 days
619.1
DO48695
77 years, male, NA, stage:2, alive, 720 days
610.8
DO50825
70 years, male, NA, stage:2, alive, 390 days
609.5
DO50787
63 years, male, NA, stage:3, alive, 480 days
596.1
DO48701
78 years, male, NA, stage:2, alive, 780 days
594.3
DO23527
72 years, male, NA, stage:1, alive, 1050 days
590.4
DO23513
76 years, male, NA, stage:3, alive, 1200 days
590.2
DO45153
77 years, female, NA, stage:2, alive, 1380 days
576.4
DO23518
67 years, male, NA, stage:2, alive, 1320 days
575.8
DO23512
60 years, male, NA, stage:1, alive, 1260 days
575.2
DO45094
76 years, male, NA, stage:3, alive, 1650 days
562.1
DO45257
46 years, male, NA, stage:3, alive, 810 days
557.4
DO23540
73 years, male, NA, stage:1, alive, 750 days
551.5
DO23536
56 years, male, NA, stage:2, alive, 930 days
548.2
DO50817
75 years, male, NA, stage:2, alive, 390 days
545.8
DO45297
61 years, female, NA, stage:4, dead, 1260 days
543.2
DO50818
65 years, male, NA, stage:2, alive, 510 days
543.1
DO45097
69 years, male, NA, stage:3, alive, 1620 days
541.3
DO23509
60 years, male, NA, stage:3, dead, 780 days
541.2
DO45123
78 years, female, NA, stage:2, dead, 570 days
533.9
DO45096
69 years, male, NA, stage:2, dead, 1290 days
527.4
DO45175
74 years, male, NA, stage:2, alive, 1140 days
519.6
DO45223
67 years, male, NA, stage:4, alive, 1020 days
515.3
DO48741
64 years, male, NA, stage:3, alive, 240 days
513.6
DO48721
58 years, female, NA, stage:1, alive, 900 days
512.7
DO45205
67 years, female, NA, stage:2, dead, 90 days
510.8
DO50791
79 years, female, NA, stage:1, dead, 480 days
507.5
DO45263
67 years, male, NA, stage:3, dead, 270 days
505.3
DO48742
76 years, male, NA, stage:2, alive, 600 days
498.3
DO48760
70 years, female, NA, stage:2, alive, 690 days
490.7
DO45181
84 years, female, NA, stage:2, alive, 1200 days
486.4
DO23514
64 years, male, NA, stage:2, alive, 1290 days
485.8
DO48700
78 years, female, NA, stage:2, alive, 810 days
480.9
DO23538
67 years, male, NA, stage:2, alive, 450 days
478.3
DO48759
73 years, male, NA, stage:3, alive, 720 days
477.6
DO23537
79 years, male, NA, stage:2, dead, 900 days
477.0
DO23510
80 years, female, NA, stage:2, alive, 870 days
471.9
DO50809
56 years, male, NA, stage:3, dead, 720 days
471.5
DO45233
83 years, male, NA, stage:3, alive, 900 days
470.2
DO23549
74 years, male, NA, stage:3, alive, 990 days
469.8
DO45219
78 years, male, NA, stage:2, alive, 1080 days
466.5
DO23526
66 years, male, NA, stage:3, alive, 1050 days
466.1
DO50774
68 years, female, NA, stage:2, alive, 720 days
463.3
DO45243
74 years, female, NA, stage:3, alive, 930 days
458.9
DO45173
63 years, male, NA, stage:3, alive, 1170 days
451.9
DO45225
69 years, male, NA, stage:1, alive, 1050 days
442.2
DO45155
69 years, male, NA, stage:2, alive, 2160 days
438.8
DO45191
61 years, female, NA, stage:2, alive, 1200 days
438.0
DO50816
63 years, male, NA, stage:2, alive, 390 days
437.9
DO23533
61 years, male, NA, stage:2, alive, 900 days
437.3
DO23539
77 years, male, NA, stage:1, alive, 1110 days
434.8
DO50776
75 years, male, NA, stage:1, alive, 690 days
427.6
DO23552
80 years, female, NA, stage:1, alive, 810 days
425.7
DO45131
53 years, male, NA, stage:4, dead, 360 days
416.8
DO23517
62 years, male, NA, stage:2, alive, 1200 days
415.5
DO50819
72 years, female, NA, stage:2, alive, 510 days
412.6
DO48719
80 years, male, NA, stage:2, alive, 690 days
412.4
DO23542
66 years, male, NA, stage:3, alive, 960 days
410.1
DO50783
62 years, male, NA, stage:3, alive, 480 days
408.5
DO45227
57 years, female, NA, stage:2, alive, 1020 days
404.7
DO23531
78 years, female, NA, stage:3, alive, 900 days
399.2
DO23543
63 years, male, NA, stage:2, alive, 1020 days
398.1
DO50859
77 years, male, NA, stage:2, alive, 180 days
389.0
DO45143
69 years, male, NA, stage:3, alive, 1290 days
384.7
DO50800
74 years, male, NA, stage:2, alive, 510 days
384.1
DO48704
68 years, female, NA, stage:3, alive, 750 days
383.5
DO50811
62 years, male, NA, stage:1, alive, 450 days
382.1
DO48712
50 years, male, NA, stage:2, alive, 810 days
373.9
DO23541
65 years, male, NA, stage:2, alive, 930 days
370.3
DO45229
74 years, male, NA, stage:1, alive, 990 days
369.4
DO50793
76 years, male, NA, stage:4, alive, 540 days
368.3
DO227801
77 years, female, NA, stage:1, alive, 660 days
362.7
DO48674
80 years, male, NA, stage:2, alive, 1260 days
354.8
DO45145
78 years, male, NA, stage:3, dead, 60 days
352.6
DO23548
78 years, female, NA, stage:1, alive, 840 days
351.9
DO45113
58 years, male, NA, stage:3, alive, 1560 days
351.9
DO45092
62 years, male, NA, stage:4, dead, 1200 days
347.1
DO45245
75 years, female, NA, stage:2, dead, 240 days
346.4
DO23551
73 years, male, NA, stage:3, dead, 150 days
343.0
DO45159
65 years, male, NA, stage:3, alive, 1470 days
338.0
DO45203
71 years, female, NA, stage:2, alive, 1170 days
337.0
DO45247
31 years, female, NA, stage:2, alive, 210 days
323.3
DO50798
77 years, male, NA, stage:3, dead, 30 days
322.7
DO23516
69 years, male, NA, stage:3, dead, 20 days
322.3
DO45169
74 years, male, NA, stage:3, alive, 1350 days
321.4
DO50803
62 years, female, NA, stage:1, alive, 540 days
320.4
DO45109
63 years, male, NA, stage:2, alive, 1590 days
320.0
DO50845
72 years, male, NA, stage:3, alive, 210 days
315.9
DO48717
54 years, male, NA, stage:4, dead, 180 days
315.6
DO45213
58 years, male, NA, stage:1, alive, 1200 days
315.3
DO45231
84 years, male, NA, stage:2, alive, 930 days
314.4
DO45185
89 years, male, NA, stage:2, alive, 600 days
311.3
DO23529
72 years, male, NA, stage:4, alive, 930 days
310.7
DO50804
81 years, male, NA, stage:2, alive, 720 days
309.9
DO45163
76 years, male, NA, stage:2, alive, 960 days
308.4
DO48681
57 years, male, NA, stage:2, alive, 900 days
301.5
DO23550
69 years, male, NA, stage:1, alive, 990 days
299.3
DO45179
78 years, female, NA, stage:2, alive, 600 days
299.2
DO45287
74 years, male, NA, stage:1, alive, 390 days
297.8
DO48751
68 years, male, NA, stage:2, dead, 480 days
295.3
DO50822
66 years, male, NA, stage:2, alive, 510 days
295.1
DO45139
63 years, male, NA, stage:3, alive, 1320 days
291.9
DO48761
55 years, male, NA, stage:2, alive, 870 days
285.2
DO48743
69 years, female, NA, stage:2, alive, 570 days
282.6
DO23524
71 years, female, NA, stage:2, alive, 1050 days
282.5
DO45117
73 years, female, NA, stage:2, dead, 1110 days
280.0
DO45095
66 years, male, NA, stage:2, alive, 1620 days
279.5
DO45221
75 years, female, NA, stage:4, dead, 390 days
277.4
DO45165
75 years, male, NA, stage:2, alive, 690 days
275.3
DO45157
62 years, male, NA, stage:2, alive, 1980 days
271.7
DO45193
68 years, female, NA, stage:4, dead, 120 days
268.1
DO45093
71 years, male, NA, stage:2, dead, 720 days
267.6
DO48733
72 years, male, NA, stage:2, alive, 600 days
267.0
DO45303
62 years, female, NA, stage:3, alive, 990 days
265.6
DO48693
71 years, male, NA, stage:2, alive, 900 days
264.2
DO45115
81 years, male, NA, stage:2, alive, 840 days
264.1
DO45299
70 years, female, NA, stage:1, alive, 1440 days
261.2
DO23547
74 years, male, NA, stage:1, alive, 1020 days
260.1
DO45241
49 years, male, NA, stage:1, alive, 1080 days
257.7
DO48727
81 years, female, NA, stage:2, dead, 390 days
256.0
DO23535
67 years, male, NA, stage:1, alive, 960 days
251.1
DO45141
73 years, male, NA, stage:2, alive, 1320 days
247.7
DO45103
47 years, male, NA, stage:3, alive, 450 days
247.5
DO48732
73 years, male, NA, stage:3, alive, 630 days
247.2
DO45265
73 years, male, NA, stage:3, alive, 1020 days
245.5
DO50799
66 years, female, NA, stage:2, alive, 540 days
245.4
DO48757
68 years, female, NA, stage:3, alive, 480 days
245.1
DO45277
64 years, male, NA, stage:3, alive, 600 days
245.0
DO50844
75 years, male, NA, stage:4, alive, 300 days
243.4
DO45273
62 years, male, NA, stage:2, alive, 480 days
242.0
DO23521
63 years, male, NA, stage:3, alive, 1110 days
239.8
DO45149
70 years, female, NA, stage:2, alive, 1260 days
233.6
DO50808
68 years, male, NA, stage:2, alive, 570 days
232.1
DO48720
62 years, female, NA, stage:2, alive, 570 days
229.7
DO45161
74 years, male, NA, stage:2, dead, 540 days
229.1
DO45137
38 years, male, NA, stage:1, alive, 1320 days
225.7
DO45217
69 years, female, NA, stage:3, dead, 270 days
223.9
DO23545
67 years, male, NA, stage:2, dead, 570 days
217.3
DO45251
57 years, female, NA, stage:2, alive, 900 days
213.4
DO45091
56 years, male, NA, stage:2, dead, 1320 days
210.5
DO48706
72 years, male, NA, stage:2, alive, 870 days
208.4
DO48723
73 years, male, NA, stage:1, alive, 600 days
206.9
DO50850
74 years, male, NA, stage:3, alive, 720 days
203.2
DO45135
77 years, male, NA, stage:1, alive, 1410 days
197.0
DO45249
57 years, male, NA, stage:1, alive, 630 days
196.9
DO50789
73 years, female, NA, stage:2, alive, 570 days
194.0
DO45305
66 years, male, NA, stage:4, alive, 300 days
193.8
DO45199
86 years, female, NA, stage:2, alive, 1350 days
193.4
DO23508
79 years, female, NA, stage:2, alive, 390 days
189.4
DO50806
70 years, male, NA, stage:4, alive, 540 days
189.2
DO45301
56 years, male, NA, stage:2, dead, 1440 days
185.7
DO45183
72 years, female, NA, stage:2, dead, 570 days
185.3
DO48682
72 years, female, NA, stage:3, dead, 120 days
181.9
DO50778
60 years, male, NA, stage:4, alive, 630 days
181.5
DO50857
72 years, male, NA, stage:2, alive, 210 days
179.0
DO45283
60 years, male, NA, stage:3, alive, 510 days
178.6
DO23528
45 years, female, NA, stage:2, alive, 1020 days
177.5
DO45269
59 years, male, NA, stage:3, alive, 750 days
175.7
DO50829
78 years, male, NA, stage:3, alive, 570 days
174.0
DO45267
73 years, male, NA, stage:3, dead, 570 days
173.7
DO45259
65 years, male, NA, stage:3, alive, 330 days
171.3
DO45275
65 years, male, NA, stage:3, dead, 10 days
170.5
DO23523
52 years, male, NA, stage:3, alive, 1080 days
168.8
DO48728
74 years, female, NA, stage:2, alive, 150 days
167.1
DO45279
67 years, male, NA, stage:3, alive, 1290 days
165.9
DO23525
71 years, male, NA, stage:4, alive, 1050 days
165.4
DO48679
72 years, male, NA, stage:2, alive, 1200 days
164.5
DO48730
73 years, female, NA, stage:2, alive, 630 days
163.1
DO45127
73 years, male, NA, stage:3, dead, 420 days
162.8
DO23530
53 years, male, NA, stage:4, dead, 180 days
158.9
DO48697
64 years, female, NA, stage:2, dead, 810 days
157.1
DO50855
47 years, male, NA, stage:2, alive, 570 days
156.2
DO48725
66 years, male, NA, stage:1, alive, 780 days
154.2
DO45289
78 years, female, NA, stage:3, alive, 360 days
153.3
DO45307
54 years, female, NA, stage:4, dead, 240 days
151.5
DO45189
85 years, female, NA, stage:2, alive, 1200 days
144.1
DO48736
76 years, female, NA, stage:1, alive, 600 days
141.2
DO50805
72 years, male, NA, stage:2, alive, 690 days
135.6
DO45187
32 years, female, NA, stage:1, alive, 1260 days
134.2
DO45239
42 years, male, NA, stage:2, alive, 870 days
133.9
DO45121
61 years, male, NA, stage:3, alive, 1530 days
129.7
DO23515
71 years, male, NA, stage:2, alive, 1230 days
122.7
DO45209
70 years, male, NA, stage:4, alive, 1350 days
121.7
DO50839
47 years, female, NA, stage:3, alive, 330 days
119.8
DO50820
77 years, female, NA, stage:3, alive, 510 days
119.3
DO50785
37 years, male, NA, stage:4, dead, 90 days
119.3
DO45211
76 years, male, NA, stage:3, alive, 240 days
107.0
DO48737
52 years, male, NA, stage:1, alive, 720 days
101.3
DO23519
65 years, male, NA, stage:3, alive, 630 days
94.8
DO48715
58 years, female, NA, stage:2, dead, 690 days
85.9
DO50814
83 years, male, NA, stage:3, alive, 420 days
81.6
DO50815
62 years, male, NA, stage:3, alive, 150 days
59.8
DO48747
62 years, male, NA, stage:3, alive, 540 days
55.9
DO45285
59 years, male, NA, stage:3, alive, 480 days
54.5
DO23511
83 years, female, NA, stage:3, dead, 180 days
46.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.2
423
Tumor
1.1
741
Tumor
1.1
915
Tumor
1.0
481
Tumor
1.0
742
Normal
0.9
867
Tumor
0.9
954
Normal
0.8
171
Tumor
0.8
416
Normal
0.8
911
Tumor
0.7
938
Normal
0.7
436
Normal
0.7
884
Normal
0.7
482
Normal
0.7
615
Tumor
0.6
261
Tumor
0.6
878
Normal
0.6
462
Normal
0.5
195
Tumor
0.5
412
Normal
0.5
515
Tumor
0.5
714
Normal
0.5
534
Normal
0.5
286
Normal
0.5
526
Normal
0.5
111
Normal
0.5
868
Normal
0.5
222
Normal
0.5
786
Normal
0.5
484
Normal
0.5
518
Normal
0.5
487
Tumor
0.5
514
Normal
0.5
981
Tumor
0.5
1042
Normal
0.5
1046
Normal
0.5
477
Tumor
0.5
414
Normal
0.5
472
Normal
0.5
922
Normal
0.5
358
Normal
0.4
452
Normal
0.4
212
Normal
0.4
978
Normal
0.4
428
Normal
0.4
862
Normal
0.4
874
Normal
0.4
196
Normal
0.4
627
Tumor
0.4
824
Normal
0.4
937
Tumor
0.4
422
Normal
0.4
914
Normal
0.4
365
Tumor
0.4
272
Normal
0.4
618
Normal
0.4
364
Normal
0.4
466
Normal
0.4
964
Normal
0.4
465
Tumor
0.4
1016
Normal
0.4
353
Tumor
0.4
262
Normal
0.4
723
Tumor
0.4
648
Normal
0.4
356
Normal
0.4
926
Normal
0.4
145
Tumor
0.4
513
Tumor
0.4
882
Normal
0.4
231
Tumor
0.3
746
Normal
0.3
662
Normal
0.3
982
Normal
0.3
686
Normal
0.3
448
Normal
0.3
755
Tumor
0.3
944
Normal
0.3
432
Normal
0.3
858
Normal
0.3
328
Normal
0.3
327
Tumor
0.3
866
Normal
0.3
698
Normal
0.3
258
Normal
0.3
388
Normal
0.3
172
Normal
0.3
376
Normal
0.3
228
Normal
0.3
664
Normal
0.3
538
Normal
0.3
1022
Normal
0.3
568
Normal
0.3
362
Normal
0.3
916
Normal
0.3
314
Normal
0.3
756
Normal
0.2
546
Normal
0.2
716
Normal
0.2
464
Normal
0.2
494
Normal
0.2
912
Normal
0.2
424
Normal
0.2
218
Normal
0.2
1028
Normal
0.2
366
Normal
0.2
528
Normal
0.2
636
Normal
0.2
696
Normal
0.2
186
Normal
0.2
132
Normal
0.2
128
Normal
0.2
1032
Normal
0.2
728
Normal
0.2
666
Normal
0.2
114
Normal
0.2
1026
Normal
0.2
474
Normal
0.2
572
Normal
0.2
968
Normal
0.2
918
Normal
0.1
257
Tumor
0.1
816
Normal
0.1
384
Normal
0.1
642
Normal
0.1
738
Normal
0.1
956
Normal
0.1
695
Tumor
0.1
224
Normal
0.1
785
Tumor
0.1
924
Normal
0.1
861
Tumor
0.1
426
Normal
0.1
818
Normal
0.1
148
Normal
0.1
415
Tumor
0.1
268
Normal
0.1
616
Normal
0.1
958
Normal
0.1
298
Normal
0.1
146
Normal
0.1
112
Tumor
0.1
976
Normal
0.1
966
Normal
0.1
857
Tumor
0.1
357
Tumor
0.0
461
Tumor
0.0
873
Tumor
0.0
628
Normal
0.0
284
Normal
0.0
852
Normal
0.0
1014
Normal
0.0
232
Normal
0.0
488
Normal
0.0
478
Normal
0.0
533
Tumor
0.0
722
Normal
0.0
162
Normal
0.0
142
Normal
0.0
141
Tumor
0.0
955
Tumor
0.0
863
Tumor
0.0
446
Normal
0.0
352
Normal
-0.1
647
Tumor
-0.1
516
Normal
-0.1
864
Normal
-0.1
386
Normal
-0.1
392
Normal
-0.1
778
Normal
-0.1
952
Normal
-0.1
558
Normal
-0.1
564
Normal
-0.1
354
Normal
-0.1
468
Normal
-0.1
554
Normal
-0.1
411
Tumor
-0.1
214
Normal
-0.1
138
Normal
-0.1
332
Normal
-0.1
523
Tumor
-0.1
312
Normal
-0.1
557
Tumor
-0.1
188
Normal
-0.1
563
Tumor
-0.1
498
Normal
-0.1
126
Normal
-0.1
571
Tumor
-0.1
136
Normal
-0.1
278
Normal
-0.1
456
Normal
-0.2
574
Normal
-0.2
492
Normal
-0.2
744
Normal
-0.2
396
Normal
-0.2
925
Tumor
-0.2
431
Tumor
-0.2
527
Tumor
-0.2
434
Normal
-0.2
977
Tumor
-0.2
124
Normal
-0.2
394
Normal
-0.2
1044
Normal
-0.2
883
Tumor
-0.3
137
Tumor
-0.3
957
Tumor
-0.3
187
Tumor
-0.3
777
Tumor
-0.3
524
Normal
-0.3
483
Tumor
-0.3
953
Tumor
-0.3
361
Tumor
-0.3
368
Normal
-0.3
444
Normal
-0.3
123
Tumor
-0.3
161
Tumor
-0.3
1021
Tumor
-0.3
984
Normal
-0.3
865
Tumor
-0.4
191
Tumor
-0.4
192
Normal
-0.4
451
Tumor
-0.4
1013
Tumor
-0.4
267
Tumor
-0.4
663
Tumor
-0.4
1045
Tumor
-0.4
185
Tumor
-0.4
393
Tumor
-0.4
217
Tumor
-0.5
727
Tumor
-0.5
493
Tumor
-0.5
1041
Tumor
-0.5
823
Tumor
-0.5
344
Normal
-0.5
537
Tumor
-0.5
685
Tumor
-0.5
721
Tumor
-0.5
433
Tumor
-0.5
113
Tumor
-0.5
427
Tumor
-0.6
363
Tumor
-0.6
943
Tumor
-0.6
355
Tumor
-0.6
745
Tumor
-0.7
672
Normal
-0.7
1015
Tumor
-0.7
421
Tumor
-0.7
635
Tumor
-0.7
814
Normal
-0.7
1025
Tumor
-0.7
447
Tumor
-0.7
913
Tumor
-0.7
525
Tumor
-0.7
737
Tumor
-0.7
435
Tumor
-0.8
342
Normal
-0.8
813
Tumor
-0.8
951
Tumor
-0.8
341
Tumor
-0.9
491
Tumor
-0.9
665
Tumor
-0.9
536
Normal
-0.9
213
Tumor
-0.9
1031
Tumor
-0.9
147
Tumor
-0.9
125
Tumor
-1.0
227
Tumor
-1.0
573
Tumor
-1.0
881
Tumor
-1.0
443
Tumor
-1.0
127
Tumor
-1.0
383
Tumor
-1.0
553
Tumor
-1.0
223
Tumor
-1.0
517
Tumor
-1.0
375
Tumor
-1.1
923
Tumor
-1.1
567
Tumor
-1.1
135
Tumor
-1.1
713
Tumor
-1.1
297
Tumor
-1.1
471
Tumor
-1.1
271
Tumor
-1.1
387
Tumor
-1.1
975
Tumor
-1.1
641
Tumor
-1.1
921
Tumor
-1.2
963
Tumor
-1.2
445
Tumor
-1.2
455
Tumor
-1.2
467
Tumor
-1.2
313
Tumor
-1.2
473
Tumor
-1.2
221
Tumor
-1.2
851
Tumor
-1.2
277
Tumor
-1.3
497
Tumor
-1.3
545
Tumor
-1.3
917
Tumor
-1.3
413
Tumor
-1.3
425
Tumor
-1.3
715
Tumor
-1.3
617
Tumor
-1.4
463
Tumor
-1.4
877
Tumor
-1.4
965
Tumor
-1.5
817
Tumor
-1.5
367
Tumor
-1.5
983
Tumor
-1.5
391
Tumor
-1.6
967
Tumor
-1.6
343
Tumor
-1.6
395
Tumor
-1.6
311
Tumor
-1.7
697
Tumor
-1.7
815
Tumor
-1.7
351
Tumor
-1.7
1043
Tumor
-1.8
283
Tumor
-1.8
331
Tumor
-1.8
211
Tumor
-2.0
743
Tumor
-2.0
724
Normal
-2.0
671
Tumor
-2.0
131
Tumor
-2.0
661
Tumor
-2.0
385
Tumor
-2.1
535
Tumor
-2.1
285
Tumor
-2.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
