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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:37.3 nTPM
HPA Brain:108.1 nTPM
GTEx:37.3 nTPM
FANTOM5:129.4 Scaled Tags Per Million
Pig:45.8 nTPM
Mouse:33.5 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.1
Sample id Sample description nTPM
Amygdala
nTPM: 47.9
1987 Female, age 91, left hemisphere 73.4
2517 Female, age 94, left hemisphere 67.6
2514 Male, age 75, right hemisphere 53.1
2814 Male, age 76, right hemisphere 27.3
2695 Female, age 67, right hemisphere 18.1
Basal amygdala
nTPM: 93.8
2243 Female, age 91, right hemisphere 150.5
2685 Female, age 94, left hemisphere 112.6
2827 Female, age 67, right hemisphere 102.9
2110 Male, age 80, left hemisphere 73.7
2609 Male, age 75, right hemisphere 63.4
1955 Male, age 76, both hemispheres 59.7
Central amygdala
nTPM: 59.7
2239 Male, age 80, left hemisphere 84.6
2701 Female, age 91, right hemisphere 70.8
2826 Female, age 94, left hemisphere 67.9
2515 Male, age 75, right hemisphere 43.1
1905 Male, age 76, both hemispheres 32.2
Corticomedial amygdala
nTPM: 108.1
2242 Female, age 91, right hemisphere 162.9
2535 Female, age 67, right hemisphere 146.4
2829 Male, age 80, left hemisphere 112.3
2429 Female, age 94, left hemisphere 106.8
2428 Male, age 75, right hemisphere 66.3
2240 Male, age 76, both hemispheres 54.1
Lateral amygdala
nTPM: 58.6
2534 Female, age 94, left hemisphere 82.2
2255 Female, age 91, right hemisphere 77.7
2256 Male, age 80, left hemisphere 66.3
1883 Male, age 76, both hemispheres 52.8
2830 Female, age 67, right hemisphere 45.6
2516 Male, age 75, right hemisphere 27.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 37.3
Samples: 152

Max nTPM: 73.3
Min nTPM: 0.6
Std nTPM: 15.9
Median nTPM: 35.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 73.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 69.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 68.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 68.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 67.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 66.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 65.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 64.8
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 63.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 63.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 62.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 61.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 60.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 59.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 57.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 57.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 57.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 57.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 57.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 56.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 56.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 55.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 54.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 54.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 54.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 53.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 53.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 53.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 53.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 53.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 53.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 52.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 52.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 52.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 51.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 51.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 51.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 51.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 51.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 50.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 49.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 48.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 48.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 47.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 47.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 47.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 47.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 47.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 47.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 46.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 46.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 45.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 45.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 44.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 44.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 43.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 43.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 41.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 41.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 40.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 40.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 40.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 37.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 37.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 37.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 37.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 37.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 36.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 36.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 36.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 36.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 36.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 35.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 35.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 35.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 35.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 35.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 35.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 35.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 35.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 34.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 34.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 34.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 33.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 33.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 33.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 33.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 33.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 33.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 33.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 33.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 32.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 32.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 32.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 32.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 32.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 32.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 31.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 31.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 31.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 30.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 30.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 30.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 29.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 28.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 27.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 27.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 27.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 27.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 27.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 26.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 26.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 26.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 25.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 24.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 24.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 24.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 24.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 24.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 23.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 22.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 22.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 21.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 21.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 21.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 21.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 21.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 20.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 20.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 20.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 20.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 19.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 19.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 19.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 19.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 19.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 18.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 18.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 17.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 15.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 15.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 14.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 14.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 12.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 10.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 9.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 9.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 8.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 5.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 2.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 0.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

129.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 129.4
FF:10151-102I7 76 years, female 129.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

45.8
Pig sample Sample description nTPM
Amygdala
nTPM: 45.8
Samples: 4

Max nTPM: 61.3
Min nTPM: 30.8
Sample A Female 61.3
Sample B Female 30.8
Sample C Male 48.2
Sample D Male 42.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 33.5
Samples: 4

Max nTPM: 37.2
Min nTPM: 31.6
Sample A Male 37.2
Sample B Male 31.6
Sample C Female 31.6
Sample D Female 33.5

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