MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.0 nTPM
HPA Brain:44.6 nTPM
GTEx:38.0 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:18.3 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 44.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.5
2666 Male, age 74, left hemisphere 57.1
2586 Male, age 75, left hemisphere 56.4
2019 Male, age 18, unknown 50.0
2411 Female, age 72, unknown 49.8
1870 Female, age 42, unknown 42.4
1830 Male, age 51, unknown 41.9
2828 Female, age 72, unknown 37.4
1833 Male, age 53, unknown 37.2
1827 Male, age 72, unknown 35.6
2219 Male, age 76, both hemispheres 27.5
Dorsal raphe nucleus
nTPM: 39.5
2750 Male, age 76, both hemispheres 46.4
2047 Male, age 72, unknown 42.4
2298 Female, age 72, unknown 39.9
1828 Male, age 53, unknown 38.2
2016 Female, age 72, unknown 30.4
Inferior colliculus
nTPM: 32.7
1890 Male, age 53, unknown 35.4
1848 Female, age 42, unknown 33.2
2097 Female, age 72, unknown 31.2
2849 Male, age 72, unknown 30.8
Median raphe nucleus
nTPM: 35.3
2220 Male, age 76, midline 35.3
Periaquaductal grey, anterior
nTPM: 36.6
1947 Male, age 18, unknown 38.5
2502 Female, age 75, unknown 36.3
1795 Male, age 51, unknown 35.0
Periaquaductal grey, dorsal
nTPM: 31.1
1840 Male, age 53, unknown 33.3
2464 Female, age 72, unknown 33.0
1831 Male, age 72, unknown 31.3
2850 Male, age 76, both hemispheres 26.7
Periaquaductal grey, lateral
nTPM: 28.2
2053 Male, age 18, unknown 28.6
2272 Male, age 74, both hemispheres 28.2
2140 Male, age 76, both hemispheres 27.7
Pretectal area
nTPM: 34.5
1817 Female, age 42, unknown 44.5
2007 Male, age 72, unknown 43.3
1816 Male, age 51, unknown 37.4
2825 Male, age 18, unknown 37.1
2224 Female, age 72, unknown 35.1
1815 Male, age 53, unknown 32.7
2407 Male, age 75, both hemispheres 31.8
2667 Female, age 75, unknown 31.4
1944 Female, age 72, unknown 29.1
2316 Male, age 76, right hemisphere 29.0
2273 Male, age 74, both hemispheres 28.1
Red nucleus
nTPM: 44.6
2588 Male, age 74, left hemisphere 54.7
2584 Male, age 75, left hemisphere 49.8
2227 Male, age 72, unknown 47.1
2769 Male, age 72, unknown 46.8
1865 Male, age 51, unknown 46.7
1821 Female, age 72, unknown 46.4
1904 Male, age 53, unknown 46.1
2785 Male, age 18, unknown 44.1
1954 Female, age 42, unknown 42.2
2823 Male, age 76, right hemisphere 41.5
2725 Female, age 75, unknown 35.6
2503 Female, age 72, unknown 33.9
Substantia nigra
nTPM: 38.5
2583 Male, age 75, right hemisphere 47.7
2665 Male, age 74, both hemispheres 43.9
1916 Female, age 42, unknown 42.1
1941 Male, age 53, unknown 42.0
2590 Female, age 75, unknown 39.7
1889 Female, age 72, unknown 38.7
1851 Male, age 51, unknown 38.5
2241 Male, age 72, unknown 34.2
2409 Female, age 72, unknown 29.6
2699 Male, age 18, unknown 28.4
Superior colliculus
nTPM: 33.5
2668 Female, age 75, unknown 43.4
1839 Male, age 51, unknown 35.5
2587 Male, age 74, left hemisphere 35.2
2664 Male, age 75, both hemispheres 32.9
2261 Male, age 18, unknown 32.6
2087 Female, age 72, unknown 31.7
1796 Male, age 53, unknown 31.4
1895 Male, age 76, right hemisphere 31.2
1913 Female, age 42, unknown 31.0
1995 Male, age 72, unknown 29.9
Ventral tegmental area
nTPM: 42.0
2223 Female, age 72, unknown 64.5
2410 Female, age 72, unknown 40.8
2021 Male, age 53, unknown 39.6
1915 Female, age 42, unknown 37.5
1942 Male, age 51, unknown 34.9
2218 Male, age 76, both hemispheres 34.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.0
Samples: 139

Max nTPM: 86.1
Min nTPM: 19.3
Std nTPM: 11.3
Median nTPM: 35.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 86.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 77.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 64.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 62.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 62.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 60.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 60.4
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 60.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 59.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 55.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 53.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.8
FF:10158-103A5 76 years, female 35.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.5
Samples: 4

Max nTPM: 24.4
Min nTPM: 20.7
Sample A Female 24.2
Sample B Female 24.4
Sample C Male 20.7
Sample D Male 20.7
Midbrain
nTPM: 20.7
Samples: 4

Max nTPM: 28.9
Min nTPM: 17.3
Sample A Female 28.9
Sample B Female 17.3
Sample C Male 17.9
Sample D Male 18.7
Periaqueductal gray
nTPM: 14.6
Samples: 3

Max nTPM: 15.6
Min nTPM: 13.3
Sample B Female 14.8
Sample C Male 15.6
Sample D Male 13.3
Superior colliculi
nTPM: 24.0
Samples: 4

Max nTPM: 28.6
Min nTPM: 18.3
Sample A Female 26.7
Sample B Female 28.6
Sample C Male 22.2
Sample D Male 18.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 18.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.3
Samples: 4

Max nTPM: 19.7
Min nTPM: 17.6
Sample A Male 17.6
Sample B Male 17.6
Sample C Female 19.7
Sample D Female 18.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
69817793 Antisense, RP_050510_03_G08, Mouse strain C57BL/6J (56 days, male) 1.9

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