We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
RAP1A
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • RAP1A
PROTEIN SUMMARY GENE INFORMATION RNA DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RAP1A
Synonyms KREV-1, SMGP21
Gene descriptioni

Full gene name according to HGNC.

RAP1A, member of RAS oncogene family
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Enzymes
RAS pathway related proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 1
Cytoband p13.2
Chromosome location (bp) 111542218 - 111716691
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

3
Ensembl ENSG00000116473 (version 109)
Entrez gene 5906
HGNC HGNC:9855
UniProt P62834 (UniProt - Evidence at protein level)
neXtProt NX_P62834
GeneCards RAP1A
Antibodypedia RAP1A antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Counteracts the mitogenic function of Ras, at least partly because it can interact with Ras GAPs and RAF in a competitive manner. Together with ITGB1BP1, regulates KRIT1 localization to microtubules and membranes 1. Plays a role in nerve growth factor (NGF)-induced neurite outgrowth. Plays a role in the regulation of embryonic blood vessel formation. Involved in the establishment of basal endothelial barrier function. Facilitates the progressive accumulation of CDH1 at mature desmosome junctions via cAMP-dependent signaling and its interaction with PKP3 2. May be involved in the regulation of the vascular endothelial growth factor receptor KDR expression at endothelial cell-cell junctions.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Hydrolase
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Neurogenesis
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

GTP-binding, Nucleotide-binding
Gene summary (Entrez)i

Useful information about the gene from Entrez

This gene encodes a member of the Ras family of small GTPases. The encoded protein undergoes a change in conformational state and activity, depending on whether it is bound to GTP or GDP. This protein is activated by several types of guanine nucleotide exchange factors (GEFs), and inactivated by two groups of GTPase-activating proteins (GAPs). The activation status of the encoded protein is therefore affected by the balance of intracellular levels of GEFs and GAPs. The encoded protein regulates signaling pathways that affect cell proliferation and adhesion, and may play a role in tumor malignancy. Pseudogenes of this gene have been defined on chromosomes 14 and 17. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2014]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RAP1A-201
ENSP00000348786
ENST00000356415
P62834
[Direct mapping] Ras-related protein Rap-1A
Show all
A8KAH9
[Target identity:100%; Query identity:100%] RAP1A, member of RAS oncogene family; Ras-related protein Rap-1A; cDNA FLJ75985, highly similar to Homo sapiens RAP1A, member of RAS oncogene family (RAP1A), transcript variant 2, mRNA
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
RAS pathway related proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003924 [GTPase activity]
GO:0003925 [G protein activity]
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005515 [protein binding]
GO:0005525 [GTP binding]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005770 [late endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0007165 [signal transduction]
GO:0007399 [nervous system development]
GO:0010008 [endosome membrane]
GO:0010976 [positive regulation of neuron projection development]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0019003 [GDP binding]
GO:0030054 [cell junction]
GO:0032486 [Rap protein signal transduction]
GO:0035579 [specific granule membrane]
GO:0038180 [nerve growth factor signaling pathway]
GO:0043547 [positive regulation of GTPase activity]
GO:0044877 [protein-containing complex binding]
GO:0045860 [positive regulation of protein kinase activity]
GO:0048471 [perinuclear region of cytoplasm]
GO:0061028 [establishment of endothelial barrier]
GO:0070062 [extracellular exosome]
GO:0070161 [anchoring junction]
GO:0070374 [positive regulation of ERK1 and ERK2 cascade]
GO:0071320 [cellular response to cAMP]
GO:0072659 [protein localization to plasma membrane]
GO:0097225 [sperm midpiece]
GO:0098696 [regulation of neurotransmitter receptor localization to postsynaptic specialization membrane]
GO:0098793 [presynapse]
GO:0098978 [glutamatergic synapse]
GO:1901888 [regulation of cell junction assembly]
GO:1990090 [cellular response to nerve growth factor stimulus]
GO:2000301 [negative regulation of synaptic vesicle exocytosis]
GO:2001214 [positive regulation of vasculogenesis]
Show all
184 aa
21 kDa
No 0
RAP1A-202
ENSP00000358723
ENST00000369709
P62834
[Direct mapping] Ras-related protein Rap-1A
Show all
A8KAH9
[Target identity:100%; Query identity:100%] RAP1A, member of RAS oncogene family; Ras-related protein Rap-1A; cDNA FLJ75985, highly similar to Homo sapiens RAP1A, member of RAS oncogene family (RAP1A), transcript variant 2, mRNA
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
RAS pathway related proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003924 [GTPase activity]
GO:0003925 [G protein activity]
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005515 [protein binding]
GO:0005525 [GTP binding]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005770 [late endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0007165 [signal transduction]
GO:0007264 [small GTPase mediated signal transduction]
GO:0007399 [nervous system development]
GO:0010008 [endosome membrane]
GO:0010976 [positive regulation of neuron projection development]
GO:0016020 [membrane]
GO:0016079 [synaptic vesicle exocytosis]
GO:0016787 [hydrolase activity]
GO:0019003 [GDP binding]
GO:0030054 [cell junction]
GO:0031267 [small GTPase binding]
GO:0032045 [guanyl-nucleotide exchange factor complex]
GO:0032486 [Rap protein signal transduction]
GO:0035579 [specific granule membrane]
GO:0038180 [nerve growth factor signaling pathway]
GO:0043005 [neuron projection]
GO:0043547 [positive regulation of GTPase activity]
GO:0044877 [protein-containing complex binding]
GO:0045860 [positive regulation of protein kinase activity]
GO:0048471 [perinuclear region of cytoplasm]
GO:0061028 [establishment of endothelial barrier]
GO:0070062 [extracellular exosome]
GO:0070161 [anchoring junction]
GO:0070374 [positive regulation of ERK1 and ERK2 cascade]
GO:0071320 [cellular response to cAMP]
GO:0072659 [protein localization to plasma membrane]
GO:0097225 [sperm midpiece]
GO:0098696 [regulation of neurotransmitter receptor localization to postsynaptic specialization membrane]
GO:0098793 [presynapse]
GO:0098978 [glutamatergic synapse]
GO:1901888 [regulation of cell junction assembly]
GO:1990090 [cellular response to nerve growth factor stimulus]
GO:2000301 [negative regulation of synaptic vesicle exocytosis]
GO:2001214 [positive regulation of vasculogenesis]
Show all
184 aa
21 kDa
No 0
RAP1A-204
ENSP00000509234
ENST00000687939
P62834
[Direct mapping] Ras-related protein Rap-1A
Show all
A8KAH9
[Target identity:100%; Query identity:100%] RAP1A, member of RAS oncogene family; Ras-related protein Rap-1A; cDNA FLJ75985, highly similar to Homo sapiens RAP1A, member of RAS oncogene family (RAP1A), transcript variant 2, mRNA
Show all
Enzymes
   ENZYME proteins
   Hydrolases
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
RAS pathway related proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0000166 [nucleotide binding]
GO:0003924 [GTPase activity]
GO:0003925 [G protein activity]
GO:0005085 [guanyl-nucleotide exchange factor activity]
GO:0005515 [protein binding]
GO:0005525 [GTP binding]
GO:0005737 [cytoplasm]
GO:0005768 [endosome]
GO:0005769 [early endosome]
GO:0005770 [late endosome]
GO:0005829 [cytosol]
GO:0005886 [plasma membrane]
GO:0007165 [signal transduction]
GO:0007399 [nervous system development]
GO:0010008 [endosome membrane]
GO:0010976 [positive regulation of neuron projection development]
GO:0016020 [membrane]
GO:0016787 [hydrolase activity]
GO:0019003 [GDP binding]
GO:0030054 [cell junction]
GO:0032486 [Rap protein signal transduction]
GO:0035579 [specific granule membrane]
GO:0038180 [nerve growth factor signaling pathway]
GO:0043547 [positive regulation of GTPase activity]
GO:0044877 [protein-containing complex binding]
GO:0045860 [positive regulation of protein kinase activity]
GO:0048471 [perinuclear region of cytoplasm]
GO:0061028 [establishment of endothelial barrier]
GO:0070062 [extracellular exosome]
GO:0070161 [anchoring junction]
GO:0070374 [positive regulation of ERK1 and ERK2 cascade]
GO:0071320 [cellular response to cAMP]
GO:0072659 [protein localization to plasma membrane]
GO:0097225 [sperm midpiece]
GO:0098696 [regulation of neurotransmitter receptor localization to postsynaptic specialization membrane]
GO:0098793 [presynapse]
GO:0098978 [glutamatergic synapse]
GO:1901888 [regulation of cell junction assembly]
GO:1990090 [cellular response to nerve growth factor stimulus]
GO:2000301 [negative regulation of synaptic vesicle exocytosis]
GO:2001214 [positive regulation of vasculogenesis]
Show all
184 aa
21 kDa
No 0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org