HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:19.5 nTPM
HPA Brain:112.1 nTPM
GTEx:19.5 nTPM
FANTOM5:88.8 Scaled Tags Per Million
Pig:58.0 nTPM
Mouse:89.3 nTPM
Allen mouse:15.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA004807Antibody HPA007114
Glial cells MediumMedium
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 112.1
Sample id Sample description nTPM
Hippocampus
nTPM: 89.8
2621 Female, age 67, right hemisphere 107.9
2148 Female, age 91, left hemisphere 103.6
1911 Female, age 85, right hemisphere 85.5
2529 Female, age 94, left hemisphere 83.8
1898 Male, age 80, left hemisphere 79.5
1855 Male, age 76, left hemisphere 78.6
Dentate gyrus
nTPM: 92.8
2531 Female, age 67, both hemispheres 119.2
1927 Female, age 91, both hemispheres 103.0
2246 Female, age 85, both hemispheres 100.0
2530 Female, age 94, left hemisphere 82.1
2010 Male, age 76, both hemispheres 79.3
2528 Male, age 74, both hemispheres 73.0
Entorhinal gyrus
nTPM: 100.9
2613 Female, age 94, left hemisphere 126.3
2764 Male, age 80, right hemisphere 108.8
1938 Female, age 85, left hemisphere 107.5
1787 Male, age 76, left hemisphere 97.1
2686 Male, age 75, right hemisphere 86.0
2117 Female, age 91, right hemisphere 79.8
Hippocampus, CA1
nTPM: 92.9
2749 Male, age 80, left hemisphere 126.0
2045 Male, age 76, both hemispheres 87.6
1873 Female, age 85, both hemispheres 87.4
2527 Male, age 74, both hemispheres 83.3
2082 Female, age 91, right hemisphere 80.4
Hippocampus, CA2
nTPM: 78.2
1940 Female, age 85, left hemisphere 89.4
2437 Female, age 94, left hemisphere 79.9
1892 Male, age 76, both hemispheres 77.9
2113 Female, age 91, right hemisphere 76.3
1963 Male, age 80, left hemisphere 75.2
2249 Male, age 74, both hemispheres 70.5
Hippocampus, CA3
nTPM: 105.6
2620 Female, age 94, left hemisphere 163.5
2861 Female, age 67, both hemispheres 123.2
2137 Male, age 80, left hemisphere 120.4
1891 Female, age 85, both hemispheres 83.7
1867 Male, age 76, both hemispheres 76.7
2436 Male, age 74, both hemispheres 66.0
Parahippocampal cortex
nTPM: 100.5
2532 Female, age 72, left hemisphere 119.4
2245 Female, age 91, both hemispheres 115.2
2622 Female, age 67, right hemisphere 113.1
1933 Female, age 85, both hemispheres 105.2
2693 Female, age 94, both hemispheres 102.8
1850 Male, age 80, both hemispheres 102.2
1990 Female, age 91, right hemisphere 96.3
2250 Female, age 67, right hemisphere 89.9
2018 Male, age 76, both hemispheres 80.6
2692 Male, age 74, both hemispheres 80.0
Perirhinal gyrus
nTPM: 112.1
1794 Male, age 80, right hemisphere 130.6
2521 Female, age 94, right hemisphere 118.6
1847 Female, age 91, left hemisphere 113.0
1841 Female, age 85, right hemisphere 110.3
2848 Male, age 76, right hemisphere 88.3
Subiculum
nTPM: 87.1
1977 Female, age 85, both hemispheres 103.7
2042 Male, age 76, both hemispheres 91.0
1901 Male, age 80, both hemispheres 90.8
2619 Male, age 74, both hemispheres 83.4
2729 Female, age 91, right hemisphere 79.2
2438 Female, age 94, left hemisphere 74.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 19.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 19.5
Samples: 197

Max nTPM: 39.2
Min nTPM: 9.7
Std nTPM: 5.6
Median nTPM: 18.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 39.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 36.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 32.1
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 31.5
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 30.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 30.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 30.4
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 30.4
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 30.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 29.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 29.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 88.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 88.8
FF:10169-103B7 60 years, female 101.7
FF:10153-102I9 76 years, female 75.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 58.0
Pig sample Sample description nTPM
Subiculum
nTPM: 49.0
Samples: 4

Max nTPM: 62.2
Min nTPM: 42.9
Sample A Female 62.2
Sample B Female 42.9
Sample C Male 46.5
Sample D Male 44.5
Dorsal hippocampus
nTPM: 54.4
Samples: 4

Max nTPM: 63.5
Min nTPM: 43.5
Sample A Female 56.7
Sample B Female 63.5
Sample C Male 43.5
Sample D Male 53.8
Entorhinal cortex
nTPM: 58.0
Samples: 4

Max nTPM: 67.5
Min nTPM: 47.9
Sample A Female 67.5
Sample B Female 47.9
Sample C Male 58.7
Sample D Male 58.0
Ventral hippocampus
nTPM: 47.4
Samples: 4

Max nTPM: 65.5
Min nTPM: 32.3
Sample A Female 32.3
Sample B Female 41.4
Sample C Male 50.5
Sample D Male 65.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 89.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 89.3
Samples: 4

Max nTPM: 106.5
Min nTPM: 79.4
Sample A Male 84.3
Sample B Male 86.9
Sample C Female 79.4
Sample D Female 106.5
Hippocampal formation
nTPM: 79.1
Samples: 4

Max nTPM: 87.4
Min nTPM: 67.4
Sample A Male 67.4
Sample B Male 86.1
Sample C Female 87.4
Sample D Female 75.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 15.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.5
67810540 Antisense, RP_040922_01_F09, Mouse strain C57BL/6J (56 days, male) 19.1
79632257 Antisense, RP_071204_01_A12, Mouse strain C57BL/6J (56 days, male) 11.9

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