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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:74.2 nTPM
HPA Brain:60.7 nTPM
GTEx:74.2 nTPM
FANTOM5:43.3 Scaled Tags Per Million
Pig:15.7 nTPM
Mouse:64.0 nTPM
Allen mouse:4.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.7
Sample id Sample description nTPM
Amygdala
nTPM: 54.1
2695 Female, age 67, right hemisphere 60.3
2517 Female, age 94, left hemisphere 57.5
1987 Female, age 91, left hemisphere 54.9
2814 Male, age 76, right hemisphere 49.7
2514 Male, age 75, right hemisphere 47.9
Basal amygdala
nTPM: 57.3
2609 Male, age 75, right hemisphere 63.4
2685 Female, age 94, left hemisphere 62.0
2243 Female, age 91, right hemisphere 61.0
2827 Female, age 67, right hemisphere 53.0
1955 Male, age 76, both hemispheres 52.7
2110 Male, age 80, left hemisphere 51.5
Central amygdala
nTPM: 60.7
2826 Female, age 94, left hemisphere 67.4
2515 Male, age 75, right hemisphere 63.5
2239 Male, age 80, left hemisphere 62.7
1905 Male, age 76, both hemispheres 59.2
2701 Female, age 91, right hemisphere 50.8
Corticomedial amygdala
nTPM: 53.1
2428 Male, age 75, right hemisphere 56.8
2829 Male, age 80, left hemisphere 56.3
2535 Female, age 67, right hemisphere 53.7
2242 Female, age 91, right hemisphere 52.6
2429 Female, age 94, left hemisphere 52.4
2240 Male, age 76, both hemispheres 46.9
Lateral amygdala
nTPM: 56.3
2534 Female, age 94, left hemisphere 66.7
2830 Female, age 67, right hemisphere 56.3
2256 Male, age 80, left hemisphere 55.8
2516 Male, age 75, right hemisphere 55.1
2255 Female, age 91, right hemisphere 54.7
1883 Male, age 76, both hemispheres 49.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 74.2
Samples: 152

Max nTPM: 131.0
Min nTPM: 38.2
Std nTPM: 16.9
Median nTPM: 72.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 131.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 126.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 123.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 120.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 111.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 108.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 106.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 104.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 104.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 102.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 99.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 98.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 98.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 96.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 95.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 93.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 92.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 92.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 92.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 91.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 90.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 90.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 89.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 89.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 88.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 87.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 87.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 86.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 86.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 86.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 86.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 85.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 85.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 85.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 84.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 84.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 84.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 83.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 82.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 81.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 81.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 81.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 81.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 81.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 81.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 80.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 80.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 80.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 80.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 80.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 79.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 79.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 79.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 79.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 79.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 78.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 78.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 77.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 77.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 76.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 76.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 76.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 75.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 75.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 75.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 75.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 75.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 75.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 74.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 74.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 73.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 73.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 73.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 73.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 73.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 72.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 72.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 72.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 72.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 72.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 72.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 72.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 71.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 71.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 71.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 71.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 71.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 71.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 71.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 70.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 70.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 70.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 70.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 70.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 70.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 69.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 69.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 69.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 68.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 68.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 68.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 68.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 67.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 67.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 66.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 66.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 65.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 65.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 65.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 65.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 65.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 64.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 64.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 64.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 63.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 63.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 62.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 61.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 61.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 60.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 59.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 59.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 58.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 58.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 58.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 58.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 57.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 56.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 56.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 55.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 55.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 55.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 54.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 53.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 53.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 52.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 51.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 51.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 50.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 50.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 50.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 50.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 49.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 48.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 48.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 48.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 47.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 47.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 46.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 43.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 40.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 38.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

43.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 43.3
FF:10151-102I7 76 years, female 43.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.7
Pig sample Sample description nTPM
Amygdala
nTPM: 15.7
Samples: 4

Max nTPM: 20.1
Min nTPM: 11.8
Sample A Female 20.1
Sample B Female 11.8
Sample C Male 14.7
Sample D Male 16.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 64.0
Samples: 4

Max nTPM: 65.7
Min nTPM: 62.0
Sample A Male 64.5
Sample B Male 62.0
Sample C Female 65.7
Sample D Female 63.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.4
70565276 Antisense, RP_050623_04_F04, Mouse strain C57BL/6J (56 days, male) 6.3
75041563 Antisense, RP_060412_04_F07, Mouse strain C57BL/6J (56 days, male) 5.0
70919878 Antisense, RP_050713_02_C02, Mouse strain C57BL/6J (56 days, male) 1.9

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