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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:296.0 nTPM
HPA Brain:271.0 nTPM
GTEx:296.0 nTPM
FANTOM5:161.5 Scaled Tags Per Million
Pig:16.7 nTPM
Mouse:80.7 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

271.0
Sample id Sample description nTPM
Amygdala
nTPM: 251.5
1987 Female, age 91, left hemisphere 328.6
2514 Male, age 75, right hemisphere 253.8
2517 Female, age 94, left hemisphere 249.3
2695 Female, age 67, right hemisphere 248.4
2814 Male, age 76, right hemisphere 177.4
Basal amygdala
nTPM: 217.7
2609 Male, age 75, right hemisphere 320.7
2243 Female, age 91, right hemisphere 218.8
2685 Female, age 94, left hemisphere 207.7
2110 Male, age 80, left hemisphere 197.3
1955 Male, age 76, both hemispheres 196.0
2827 Female, age 67, right hemisphere 165.7
Central amygdala
nTPM: 271.0
2515 Male, age 75, right hemisphere 427.3
2826 Female, age 94, left hemisphere 330.8
2239 Male, age 80, left hemisphere 215.1
2701 Female, age 91, right hemisphere 199.9
1905 Male, age 76, both hemispheres 181.7
Corticomedial amygdala
nTPM: 208.0
2428 Male, age 75, right hemisphere 283.8
2242 Female, age 91, right hemisphere 247.0
2829 Male, age 80, left hemisphere 205.8
2535 Female, age 67, right hemisphere 183.6
2429 Female, age 94, left hemisphere 180.3
2240 Male, age 76, both hemispheres 147.2
Lateral amygdala
nTPM: 239.8
2516 Male, age 75, right hemisphere 315.3
2256 Male, age 80, left hemisphere 256.2
2534 Female, age 94, left hemisphere 252.1
2255 Female, age 91, right hemisphere 227.6
1883 Male, age 76, both hemispheres 197.2
2830 Female, age 67, right hemisphere 190.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

296.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 296.0
Samples: 152

Max nTPM: 732.8
Min nTPM: 12.1
Std nTPM: 110.4
Median nTPM: 274.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 732.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 630.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 607.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 581.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 555.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 554.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 549.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 524.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 523.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 467.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 466.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 453.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 449.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 439.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 438.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 428.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 417.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 414.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 403.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 403.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 402.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 400.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 400.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 390.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 390.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 387.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 382.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 377.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 374.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 373.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 366.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 363.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 358.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 355.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 354.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 354.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 352.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 351.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 351.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 347.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 344.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 343.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 342.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 341.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 336.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 335.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 334.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 333.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 332.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 330.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 329.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 329.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 328.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 327.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 320.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 319.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 318.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 315.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 309.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 307.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 307.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 306.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 306.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 306.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 301.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 295.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 292.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 291.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 290.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 287.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 286.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 284.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 283.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 278.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 277.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 277.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 270.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 269.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 267.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 266.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 266.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 265.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 265.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 264.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 263.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 262.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 261.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 261.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 259.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 258.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 258.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 254.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 253.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 253.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 251.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 251.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 251.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 250.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 248.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 248.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 246.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 245.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 244.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 244.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 242.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 241.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 241.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 240.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 239.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 236.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 236.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 236.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 235.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 234.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 231.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 231.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 230.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 230.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 228.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 221.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 220.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 218.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 209.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 205.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 204.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 202.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 201.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 200.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 197.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 195.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 191.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 190.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 180.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 178.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 174.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 172.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 169.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 167.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 167.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 166.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 163.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 155.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 155.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 150.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 149.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 139.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 131.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 117.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 108.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 105.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 92.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 12.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

161.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 161.5
FF:10151-102I7 76 years, female 161.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.7
Pig sample Sample description nTPM
Amygdala
nTPM: 16.7
Samples: 4

Max nTPM: 23.0
Min nTPM: 12.2
Sample A Female 23.0
Sample B Female 12.2
Sample C Male 15.2
Sample D Male 16.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 80.7
Samples: 4

Max nTPM: 94.5
Min nTPM: 72.5
Sample A Male 77.8
Sample B Male 72.5
Sample C Female 94.5
Sample D Female 78.0

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