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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expression
Retinai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Ganglion cells : Not detected
Inner nuclear layer: Not detected
Inner plexiform layer: Not detected
Limiting membrane: Not detected
Nerve fiber layer: Not detected
Outer plexiform layer: Not detected
Photoreceptor cells: High
Pigment epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:648.0 nTPM
GTEx:648.0 nTPM
FANTOM5:75.8 Scaled Tags Per Million
Pig:1361.0 nTPM
Mouse:7806.9 nTPM

RETINA - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA062235
Pigment epithelial cells Not detected
Photoreceptor cells High
Limiting membrane Not detected
Outer plexiform layer Not detected
Inner nuclear layer Not detected
Inner plexiform layer Not detected
Ganglion cells Not detected
Nerve fiber layer Not detected

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

648.0
GTEx sample id Sample description nTPM
Retina
Average nTPM: 648.0
Samples: 105

Max nTPM: 1202.9
Min nTPM: 241.2
Std nTPM: 224.8
Median nTPM:
414_1 84 years, female 1202.9
518_1 75 years, female 1190.0
491_1 89 years, female 1188.5
149_1 88 years, male 1183.3
413_1 59 years, female 1155.1
466_1 57 years, female 1108.2
139_1 64 years, female 1102.9
246_1 77 years, male 1073.0
322_1 76 years, male 1049.9
490_1 67 years, female 1017.9
415_1 77 years, female 1002.9
126_1 63 years, male 954.2
377_1 82 years, female 943.9
468_1 89 years, male 940.0
217_1 76 years, male 939.4
389_1 86 years, female 939.2
162_1 79 years, female 922.5
43_1 64 years, female 911.8
266_1 85 years, male 896.5
153_1 70 years, female 852.5
81_1 67 years, male 831.2
316_1 62 years, male 818.7
265_1 87 years, male 790.6
251_1 78 years, male 789.5
32_1 67 years, male 774.2
35_1 74 years, female 764.9
320_1 89 years, female 763.0
404_1 82 years, female 762.5
526_1 61 years, male 727.7
115_1 83 years, male 726.2
254_1 77 years, female 714.6
425_1 59 years, female 686.2
503_1 68 years, male 680.8
89_1 63 years, male 680.6
17_1 71 years, male 677.8
501_1 88 years, male 674.5
229_1 69 years, female 671.4
18_1 88 years, male 665.6
109_1 81 years, female 660.3
495_1 57 years, female 654.9
9_1 66 years, female 654.8
394_1 75 years, female 651.7
142_1 61 years, female 649.7
405_1 91 years, male 647.9
318_1 68 years, male 647.2
375_1 74 years, female 646.5
4_1 88 years, female 638.8
315_1 62 years, female 631.4
396_1 62 years, male 628.6
499_1 55 years, female 618.8
293_1 68 years, female 601.9
480_1 63 years, male 596.3
376_1 75 years, female 595.0
2_1 77 years, female 592.3
117_1 61 years, male 587.3
292_1 71 years, male 586.4
313_1 79 years, female 586.2
517_1 88 years, male 576.9
288_1 66 years, female 576.2
6_1 73 years, female 576.0
189_1 76 years, male 576.0
319_1 81 years, male 575.4
137_1 83 years, male 573.5
324_1 76 years, male 573.2
307_1 66 years, female 571.3
145_1 84 years, male 570.9
355_1 70 years, female 559.6
237_1 82 years, male 555.4
384_1 83 years, male 547.6
386_1 76 years, male 541.4
335_1 73 years, female 530.3
406_1 79 years, male 527.7
42_1 85 years, male 524.0
352_1 62 years, male 522.7
120_1 70 years, female 517.4
314_1 67 years, male 489.3
264_1 73 years, female 488.7
163_1 78 years, male 486.1
243_1 75 years, male 485.0
172_1 72 years, female 483.7
311_1 78 years, male 483.0
291_1 76 years, male 480.9
321_1 62 years, female 475.3
119_1 70 years, female 467.7
349_1 83 years, male 464.8
356_1 87 years, female 461.2
347_1 72 years, male 441.9
348_1 84 years, male 437.4
177_1 74 years, male 426.5
99_1 64 years, male 424.3
295_1 61 years, female 417.4
286_1 68 years, female 412.4
447_1 81 years, male 411.8
379_1 60 years, male 411.7
354_1 81 years, female 404.5
41_1 94 years, female 403.6
351_1 91 years, male 383.1
350_1 84 years, female 371.6
452_1 88 years, female 343.1
173_1 67 years, male 340.5
353_1 82 years, female 335.9
218_1 71 years, female 334.3
506_1 65 years, male 324.9
317_1 60 years, male 257.4
308_1 70 years, female 241.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

75.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 75.8
FF:10030-101E3 24-65 years, mixed 75.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1361.0
Pig sample Sample description nTPM
Retina
nTPM: 1361.0
Samples: 4

Max nTPM: 1468.4
Min nTPM: 1286.4
Sample A Female 1286.4
Sample B Female 1370.5
Sample C Male 1468.4
Sample D Male 1318.7

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7806.9
Mouse sample Sample description nTPM
Retina
nTPM: 7806.9
Samples: 4

Max nTPM: 8364.2
Min nTPM: 7312.8
Sample A Male 7980.1
Sample B Male 7312.8
Sample C Female 8364.2
Sample D Female 7570.3

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