MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:49.1 nTPM
HPA Brain:230.5 nTPM
GTEx:49.1 nTPM
FANTOM5:80.3 Scaled Tags Per Million
Pig:125.3 nTPM
Mouse:32.8 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 230.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.5
2828 Female, age 72, unknown 179.5
1827 Male, age 72, unknown 165.9
2019 Male, age 18, unknown 102.3
2586 Male, age 75, left hemisphere 97.8
1833 Male, age 53, unknown 88.3
1870 Female, age 42, unknown 78.9
1830 Male, age 51, unknown 73.8
2411 Female, age 72, unknown 66.4
2666 Male, age 74, left hemisphere 65.9
2219 Male, age 76, both hemispheres 56.1
Dorsal raphe nucleus
nTPM: 110.9
2298 Female, age 72, unknown 152.9
2016 Female, age 72, unknown 148.4
1828 Male, age 53, unknown 112.7
2047 Male, age 72, unknown 74.5
2750 Male, age 76, both hemispheres 65.9
Inferior colliculus
nTPM: 96.0
1848 Female, age 42, unknown 127.7
2097 Female, age 72, unknown 89.0
2849 Male, age 72, unknown 85.3
1890 Male, age 53, unknown 81.9
Median raphe nucleus
nTPM: 72.8
2220 Male, age 76, midline 72.8
Periaquaductal grey, anterior
nTPM: 144.0
1795 Male, age 51, unknown 196.2
2502 Female, age 75, unknown 119.3
1947 Male, age 18, unknown 116.5
Periaquaductal grey, dorsal
nTPM: 157.4
2850 Male, age 76, both hemispheres 202.6
1831 Male, age 72, unknown 180.7
1840 Male, age 53, unknown 139.5
2464 Female, age 72, unknown 106.9
Periaquaductal grey, lateral
nTPM: 230.5
2272 Male, age 74, both hemispheres 346.0
2140 Male, age 76, both hemispheres 173.2
2053 Male, age 18, unknown 172.4
Pretectal area
nTPM: 203.5
2273 Male, age 74, both hemispheres 533.8
1816 Male, age 51, unknown 233.2
1944 Female, age 72, unknown 218.0
1815 Male, age 53, unknown 183.5
2007 Male, age 72, unknown 171.9
1817 Female, age 42, unknown 170.1
2667 Female, age 75, unknown 161.7
2224 Female, age 72, unknown 159.5
2407 Male, age 75, both hemispheres 153.8
2316 Male, age 76, right hemisphere 140.1
2825 Male, age 18, unknown 113.4
Red nucleus
nTPM: 87.2
2725 Female, age 75, unknown 135.3
2785 Male, age 18, unknown 119.3
2823 Male, age 76, right hemisphere 92.9
2503 Female, age 72, unknown 92.7
1865 Male, age 51, unknown 91.4
1904 Male, age 53, unknown 89.2
1954 Female, age 42, unknown 84.4
2769 Male, age 72, unknown 77.4
1821 Female, age 72, unknown 77.1
2227 Male, age 72, unknown 74.4
2588 Male, age 74, left hemisphere 64.7
2584 Male, age 75, left hemisphere 47.2
Substantia nigra
nTPM: 92.2
1889 Female, age 72, unknown 145.7
2590 Female, age 75, unknown 108.0
2409 Female, age 72, unknown 97.4
1851 Male, age 51, unknown 96.3
2699 Male, age 18, unknown 95.2
1916 Female, age 42, unknown 86.8
2665 Male, age 74, both hemispheres 79.8
1941 Male, age 53, unknown 77.0
2583 Male, age 75, right hemisphere 68.9
2241 Male, age 72, unknown 66.6
Superior colliculus
nTPM: 151.7
2261 Male, age 18, unknown 215.6
2087 Female, age 72, unknown 194.9
1995 Male, age 72, unknown 189.1
2587 Male, age 74, left hemisphere 172.7
1796 Male, age 53, unknown 161.7
1913 Female, age 42, unknown 154.3
2664 Male, age 75, both hemispheres 121.6
1895 Male, age 76, right hemisphere 108.6
2668 Female, age 75, unknown 102.5
1839 Male, age 51, unknown 95.7
Ventral tegmental area
nTPM: 83.3
2021 Male, age 53, unknown 100.2
2410 Female, age 72, unknown 98.3
1915 Female, age 42, unknown 84.9
2218 Male, age 76, both hemispheres 79.9
1942 Male, age 51, unknown 75.3
2223 Female, age 72, unknown 61.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 49.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 49.1
Samples: 139

Max nTPM: 217.3
Min nTPM: 12.0
Std nTPM: 31.7
Median nTPM: 41.5
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 217.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 160.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 151.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 150.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 128.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 124.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 122.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 116.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 108.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 97.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 96.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 80.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.3
FF:10158-103A5 76 years, female 80.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 125.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 63.8
Samples: 4

Max nTPM: 77.9
Min nTPM: 49.4
Sample A Female 65.4
Sample B Female 77.9
Sample C Male 49.4
Sample D Male 62.6
Midbrain
nTPM: 105.6
Samples: 4

Max nTPM: 215.3
Min nTPM: 34.4
Sample A Female 132.9
Sample B Female 39.9
Sample C Male 215.3
Sample D Male 34.4
Periaqueductal gray
nTPM: 88.4
Samples: 3

Max nTPM: 101.3
Min nTPM: 67.8
Sample B Female 67.8
Sample C Male 101.3
Sample D Male 96.1
Superior colliculi
nTPM: 125.3
Samples: 4

Max nTPM: 215.5
Min nTPM: 65.5
Sample A Female 65.5
Sample B Female 215.5
Sample C Male 136.6
Sample D Male 83.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 32.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.8
Samples: 4

Max nTPM: 34.7
Min nTPM: 30.8
Sample A Male 33.8
Sample B Male 34.7
Sample C Female 31.8
Sample D Female 30.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
69015727 Antisense, RP_050315_01_F01, Mouse strain C57BL/6J (56 days, male) 1.7
72077452 Antisense, RP_051017_03_A06, Mouse strain C57BL/6J (56 days, male) 1.5

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