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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:60.1 nTPM
HPA Brain:31.0 nTPM
GTEx:60.1 nTPM
FANTOM5:93.3 Scaled Tags Per Million
Pig:146.6 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 24.5
1981 Female, age 72, midline 27.7
2194 Female, age 79, both hemispheres 27.3
2048 Male, age 55, midline 24.8
2565 Male, age 75, midline 24.1
2816 Male, age 47, midline 18.7
Cervical spinal cord, dorsal horn
nTPM: 29.5
2069 Male, age 47, both hemispheres 45.1
2173 Female, age 72, unknown 29.2
2296 Male, age 66, both hemispheres 28.9
1877 Male, age 55, unknown 25.4
2297 Male, age 75, both hemispheres 25.2
2721 Male, age 90, both hemispheres 23.3
Cervical spinal cord, ventral horn
nTPM: 31.0
2098 Female, age 72, unknown 51.6
2480 Male, age 75, both hemispheres 30.7
2068 Male, age 55, unknown 29.3
2295 Male, age 66, both hemispheres 28.5
2809 Male, age 90, both hemispheres 26.7
2820 Female, age 79, both hemispheres 19.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

60.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 60.1
Samples: 159

Max nTPM: 363.0
Min nTPM: 13.8
Std nTPM: 49.3
Median nTPM: 42.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 363.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 219.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 193.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 189.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 168.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 165.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 165.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 159.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 159.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 157.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 152.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 151.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 132.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 132.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 131.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 128.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 123.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 122.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 122.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 117.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 115.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 113.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 112.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 107.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 107.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 102.9
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 100.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 94.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 94.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 90.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 89.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 88.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 87.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 85.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 83.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 81.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 81.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 79.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 78.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 78.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 75.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 75.4
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 75.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 72.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 70.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 70.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 68.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 67.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 67.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 65.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 65.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 64.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 63.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 62.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 60.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 60.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 57.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 56.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 55.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 55.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 55.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 55.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 54.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 54.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 53.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 52.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 50.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 49.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 48.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 48.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 47.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 47.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 46.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 46.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 45.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 45.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 45.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 44.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 43.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 42.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 42.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 42.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 42.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 42.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 41.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 40.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 40.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 40.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 39.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 38.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 36.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 36.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 36.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 35.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 35.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 35.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 35.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 34.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 33.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 33.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 33.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 33.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 32.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 32.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 32.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 30.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 30.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 29.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 29.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 28.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 28.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 28.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 27.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 27.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 27.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 27.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 26.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 26.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 26.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 26.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 26.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 26.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 25.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 25.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 25.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 25.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 24.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 23.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 23.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 23.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 22.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 22.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 22.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 22.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 22.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 21.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 21.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 21.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 20.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 20.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 20.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 20.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 19.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 19.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 19.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 19.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 18.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 17.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 17.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 17.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 16.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 16.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 16.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 15.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 14.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 14.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 14.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 14.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 13.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

93.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 93.3
FF:10181-103D1 60 years, female 116.2
FF:10159-103A6 76 years, female 70.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 146.6
Samples: 4

Max nTPM: 313.2
Min nTPM: 37.3
Sample A Female 37.3
Sample B Female 155.2
Sample C Male 313.2
Sample D Male 80.7
Ventral spinal cord
nTPM: 56.7
Samples: 4

Max nTPM: 120.2
Min nTPM: 27.0
Sample A Female 27.0
Sample B Female 38.5
Sample C Male 120.2
Sample D Male 40.9

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