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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:101.9 nTPM
HPA:98.4 nTPM
GTEx:101.9 nTPM
FANTOM5:169.9 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.4
overview
Male, age 65
Small intestine sample 232
nTPM: 69.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 149.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 91.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 82.9

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 101.9
Samples: 187

Max nTPM: 338.9
Min nTPM: 9.6
Std nTPM: 64.4
Median nTPM: 87.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 338.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 325.7
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 304.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 303.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 292.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 282.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 276.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 265.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 262.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 260.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 250.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 243.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 230.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 230.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 220.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 216.7
GTEX-13111-1426-SM-5DUW3 50-59 years, male 187.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 187.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 182.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 181.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 174.0
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 172.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 169.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 168.1
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 166.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 156.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 154.4
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 152.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 150.7
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 148.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 148.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 147.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 145.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 141.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 141.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 140.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 139.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 138.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 137.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 133.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 130.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 130.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 129.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 128.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 127.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 127.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 124.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 123.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 123.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 122.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 122.2
GTEX-1192X-2526-SM-59868 50-59 years, male 120.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 119.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 119.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 118.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 118.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 115.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 112.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 108.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 108.8
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 108.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 107.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 106.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 106.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 105.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 103.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 102.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 101.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 100.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 99.9
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 99.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 98.4
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 98.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 96.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 96.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 96.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 95.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 95.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 94.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 94.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 93.9
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 93.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 93.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 93.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 93.4
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 92.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 92.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 91.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 91.7
GTEX-YFCO-1326-SM-664NV 40-49 years, male 91.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 89.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 88.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 87.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 87.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 86.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 85.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 85.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 85.0
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 84.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 84.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 84.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 83.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 81.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 80.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 80.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 78.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 77.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 77.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 76.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 76.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 76.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 76.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 75.3
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 74.4
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 71.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 70.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 70.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 69.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 68.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 68.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 67.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 67.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 67.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 66.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 65.2
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 64.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 64.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 63.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 62.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 62.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 62.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 61.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 60.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 60.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 60.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 58.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 58.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 58.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 57.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 56.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 56.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 56.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 55.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 55.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 55.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 54.4
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 54.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 53.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 52.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 52.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 51.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 51.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 51.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 51.2
GTEX-1C475-1426-SM-793CH 40-49 years, female 51.1
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 50.5
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 50.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 50.1
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 50.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 49.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 49.0
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 45.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 45.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 44.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 42.6
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 41.8
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 41.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 41.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 40.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 40.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 39.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 38.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 37.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 36.2
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 35.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 34.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 34.4
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 34.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 32.8
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 31.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 28.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 27.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 25.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 23.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 16.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 15.5
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 9.6
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

169.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 169.9
FF:10024-101D6 15,40,85 years, mixed 169.9

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