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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:104.1 nTPM
HPA Brain:74.3 nTPM
GTEx:104.1 nTPM
FANTOM5:31.4 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:74.0 nTPM
Allen mouse:6.7 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.3
Sample id Sample description nTPM
Amygdala
nTPM: 69.5
1987 Female, age 91, left hemisphere 74.8
2695 Female, age 67, right hemisphere 73.2
2517 Female, age 94, left hemisphere 69.0
2514 Male, age 75, right hemisphere 66.8
2814 Male, age 76, right hemisphere 63.7
Basal amygdala
nTPM: 66.8
2609 Male, age 75, right hemisphere 77.4
2243 Female, age 91, right hemisphere 72.5
2110 Male, age 80, left hemisphere 72.1
2685 Female, age 94, left hemisphere 67.9
1955 Male, age 76, both hemispheres 56.1
2827 Female, age 67, right hemisphere 55.0
Central amygdala
nTPM: 74.3
2826 Female, age 94, left hemisphere 89.0
2515 Male, age 75, right hemisphere 86.6
2239 Male, age 80, left hemisphere 69.9
2701 Female, age 91, right hemisphere 66.7
1905 Male, age 76, both hemispheres 59.5
Corticomedial amygdala
nTPM: 66.6
2829 Male, age 80, left hemisphere 88.0
2428 Male, age 75, right hemisphere 84.9
2242 Female, age 91, right hemisphere 66.0
2429 Female, age 94, left hemisphere 62.2
2240 Male, age 76, both hemispheres 49.3
2535 Female, age 67, right hemisphere 49.0
Lateral amygdala
nTPM: 69.9
2516 Male, age 75, right hemisphere 83.0
2534 Female, age 94, left hemisphere 80.4
2255 Female, age 91, right hemisphere 67.4
2256 Male, age 80, left hemisphere 63.3
2830 Female, age 67, right hemisphere 62.7
1883 Male, age 76, both hemispheres 62.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 104.1
Samples: 152

Max nTPM: 219.5
Min nTPM: 35.2
Std nTPM: 24.5
Median nTPM: 105.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 219.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 193.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 155.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 153.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 152.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 140.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 140.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 137.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 136.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 134.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 134.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 134.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 132.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 130.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 128.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 128.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 127.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 127.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 127.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 126.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 126.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 125.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 124.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 124.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 124.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 123.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 122.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 121.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 121.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 121.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 120.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 119.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 119.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 119.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 119.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 119.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 118.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 118.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 118.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 118.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 118.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 117.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 116.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 116.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 115.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 115.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 115.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 114.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 113.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 112.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 112.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 112.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 111.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 111.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 111.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 111.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 111.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 111.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 111.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 111.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 110.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 110.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 110.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 110.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 109.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 109.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 109.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 109.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 107.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 107.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 107.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 106.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 106.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 106.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 106.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 105.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 105.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 105.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 104.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 104.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 102.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 102.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 102.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 102.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 102.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 102.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 101.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 100.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 100.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 99.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 99.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 99.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 99.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 98.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 98.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 98.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 98.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 98.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 98.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 97.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 97.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 97.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 95.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 95.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 94.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 94.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 94.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 93.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 93.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 91.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 91.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 90.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 89.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 88.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 87.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 87.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 85.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 83.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 83.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 82.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 82.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 82.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 81.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 81.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 80.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 80.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 79.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 79.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 79.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 79.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 78.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 76.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 76.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 75.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 73.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 72.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 72.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 71.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 71.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 69.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 68.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 63.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 63.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 63.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 62.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 62.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 61.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 59.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 58.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 57.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 35.2
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

31.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 31.4
FF:10151-102I7 76 years, female 31.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

21.3
Pig sample Sample description nTPM
Amygdala
nTPM: 21.4
Samples: 4

Max nTPM: 29.7
Min nTPM: 15.8
Sample A Female 29.7
Sample B Female 15.8
Sample C Male 19.6
Sample D Male 20.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

74.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 74.0
Samples: 4

Max nTPM: 77.3
Min nTPM: 70.7
Sample A Male 77.3
Sample B Male 74.4
Sample C Female 73.5
Sample D Female 70.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.7
77910727 Antisense, RP_070208_04_F08, Mouse strain C57BL/6J (56 days, male) 9.4
583862 Antisense, RP_040831_01_C01, Mouse strain C57BL/6J (56 days, male) 3.9

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