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TISSUE AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:96.4 nTPM
HPA Brain:129.2 nTPM
GTEx:96.4 nTPM
FANTOM5:301.4 Scaled Tags Per Million
Pig:522.3 nTPM
Mouse:721.0 nTPM
Allen mouse:20.5 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

129.2
Sample id Sample description nTPM
Amygdala
nTPM: 80.2
1987 Female, age 91, left hemisphere 130.4
2517 Female, age 94, left hemisphere 94.2
2514 Male, age 75, right hemisphere 77.1
2695 Female, age 67, right hemisphere 52.3
2814 Male, age 76, right hemisphere 47.3
Basal amygdala
nTPM: 116.9
2243 Female, age 91, right hemisphere 176.8
2685 Female, age 94, left hemisphere 135.5
2110 Male, age 80, left hemisphere 118.1
2827 Female, age 67, right hemisphere 97.8
1955 Male, age 76, both hemispheres 90.3
2609 Male, age 75, right hemisphere 82.8
Central amygdala
nTPM: 100.0
2239 Male, age 80, left hemisphere 150.7
2826 Female, age 94, left hemisphere 105.6
2701 Female, age 91, right hemisphere 99.3
2515 Male, age 75, right hemisphere 92.6
1905 Male, age 76, both hemispheres 51.5
Corticomedial amygdala
nTPM: 129.2
2829 Male, age 80, left hemisphere 169.1
2242 Female, age 91, right hemisphere 163.9
2429 Female, age 94, left hemisphere 128.5
2535 Female, age 67, right hemisphere 126.9
2240 Male, age 76, both hemispheres 101.7
2428 Male, age 75, right hemisphere 84.8
Lateral amygdala
nTPM: 92.5
2255 Female, age 91, right hemisphere 127.0
2534 Female, age 94, left hemisphere 120.7
2256 Male, age 80, left hemisphere 110.6
1883 Male, age 76, both hemispheres 79.3
2830 Female, age 67, right hemisphere 64.3
2516 Male, age 75, right hemisphere 52.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 96.4
Samples: 152

Max nTPM: 284.1
Min nTPM: 3.4
Std nTPM: 56.3
Median nTPM: 87.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 284.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 279.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 253.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 227.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 221.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 211.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 206.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 204.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 197.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 192.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 191.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 190.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 187.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 175.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 170.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 168.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 168.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 167.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 161.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 159.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 158.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 157.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 153.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 151.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 150.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 150.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 148.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 147.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 147.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 145.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 141.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 141.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 139.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 135.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 134.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 131.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 130.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 125.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 125.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 124.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 124.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 124.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 123.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 122.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 122.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 121.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 119.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 119.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 119.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 117.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 116.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 116.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 113.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 113.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 111.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 111.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 107.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 106.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 105.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 103.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 102.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 102.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 101.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 99.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 97.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 96.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 96.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 96.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 96.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 95.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 94.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 93.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 92.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 91.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 90.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 88.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 87.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 87.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 87.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 86.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 84.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 82.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 81.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 81.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 80.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 79.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 79.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 76.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 75.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 75.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 72.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 71.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 71.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 70.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 70.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 68.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 67.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 67.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 64.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 64.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 64.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 62.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 62.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 62.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 62.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 61.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 61.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 59.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 58.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 57.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 56.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 56.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 54.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 53.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 50.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 50.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 49.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 48.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 47.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 47.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 47.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 47.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 45.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 44.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 42.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 42.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 42.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 41.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 40.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 40.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 37.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 36.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 36.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 36.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 34.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 33.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 33.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 33.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 33.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 29.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 26.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 24.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 23.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 21.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 21.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 20.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 17.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 14.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 13.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 11.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 7.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

301.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 301.4
FF:10151-102I7 76 years, female 301.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

522.3
Pig sample Sample description nTPM
Amygdala
nTPM: 522.3
Samples: 4

Max nTPM: 717.1
Min nTPM: 400.4
Sample A Female 717.1
Sample B Female 400.4
Sample C Male 527.0
Sample D Male 444.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

721.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 721.0
Samples: 4

Max nTPM: 773.1
Min nTPM: 686.7
Sample A Male 686.7
Sample B Male 773.1
Sample C Female 687.9
Sample D Female 736.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 20.5
73520985 Antisense, RP_051101_02_G04, Mouse strain C57BL/6J (56 days, male) 20.8
69735078 Antisense, RP_050503_02_A07, Mouse strain C57BL/6J (56 days, male) 20.1

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