MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.4 nTPM
HPA Brain:41.7 nTPM
GTEx:20.4 nTPM
FANTOM5:31.1 Scaled Tags Per Million
Pig:30.6 nTPM
Mouse:11.1 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 41.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.2
2019 Male, age 18, unknown 33.9
2219 Male, age 76, both hemispheres 32.8
2666 Male, age 74, left hemisphere 31.5
2586 Male, age 75, left hemisphere 31.3
2828 Female, age 72, unknown 27.3
1827 Male, age 72, unknown 25.6
1870 Female, age 42, unknown 20.8
1833 Male, age 53, unknown 19.9
1830 Male, age 51, unknown 19.7
2411 Female, age 72, unknown 19.0
Dorsal raphe nucleus
nTPM: 26.4
1828 Male, age 53, unknown 39.2
2047 Male, age 72, unknown 36.1
2750 Male, age 76, both hemispheres 19.6
2298 Female, age 72, unknown 18.5
2016 Female, age 72, unknown 18.3
Inferior colliculus
nTPM: 34.6
1890 Male, age 53, unknown 43.5
2097 Female, age 72, unknown 40.1
1848 Female, age 42, unknown 30.0
2849 Male, age 72, unknown 25.0
Median raphe nucleus
nTPM: 19.8
2220 Male, age 76, midline 19.8
Periaquaductal grey, anterior
nTPM: 41.7
1795 Male, age 51, unknown 53.2
1947 Male, age 18, unknown 44.4
2502 Female, age 75, unknown 27.4
Periaquaductal grey, dorsal
nTPM: 23.5
2850 Male, age 76, both hemispheres 28.1
2464 Female, age 72, unknown 23.9
1840 Male, age 53, unknown 21.5
1831 Male, age 72, unknown 20.7
Periaquaductal grey, lateral
nTPM: 27.5
2140 Male, age 76, both hemispheres 30.0
2272 Male, age 74, both hemispheres 26.9
2053 Male, age 18, unknown 25.5
Pretectal area
nTPM: 36.5
1944 Female, age 72, unknown 58.7
1816 Male, age 51, unknown 57.1
2007 Male, age 72, unknown 46.2
2667 Female, age 75, unknown 40.1
2316 Male, age 76, right hemisphere 38.2
1817 Female, age 42, unknown 36.6
2407 Male, age 75, both hemispheres 28.4
1815 Male, age 53, unknown 27.0
2224 Female, age 72, unknown 25.1
2825 Male, age 18, unknown 22.1
2273 Male, age 74, both hemispheres 21.8
Red nucleus
nTPM: 21.2
2785 Male, age 18, unknown 41.3
2503 Female, age 72, unknown 28.8
2584 Male, age 75, left hemisphere 23.6
2227 Male, age 72, unknown 21.9
2588 Male, age 74, left hemisphere 21.8
2769 Male, age 72, unknown 21.8
1865 Male, age 51, unknown 18.6
1904 Male, age 53, unknown 17.7
2823 Male, age 76, right hemisphere 17.3
1954 Female, age 42, unknown 17.2
1821 Female, age 72, unknown 15.7
2725 Female, age 75, unknown 9.1
Substantia nigra
nTPM: 23.2
2665 Male, age 74, both hemispheres 34.6
1889 Female, age 72, unknown 31.3
2583 Male, age 75, right hemisphere 30.2
2590 Female, age 75, unknown 28.8
1941 Male, age 53, unknown 28.2
1916 Female, age 42, unknown 19.0
2241 Male, age 72, unknown 17.8
1851 Male, age 51, unknown 17.1
2409 Female, age 72, unknown 12.3
2699 Male, age 18, unknown 12.3
Superior colliculus
nTPM: 30.3
2668 Female, age 75, unknown 58.8
2087 Female, age 72, unknown 40.8
2664 Male, age 75, both hemispheres 31.5
1913 Female, age 42, unknown 28.0
2261 Male, age 18, unknown 28.0
1839 Male, age 51, unknown 24.0
1796 Male, age 53, unknown 23.5
1995 Male, age 72, unknown 23.2
2587 Male, age 74, left hemisphere 23.2
1895 Male, age 76, right hemisphere 22.2
Ventral tegmental area
nTPM: 20.1
2218 Male, age 76, both hemispheres 23.8
2223 Female, age 72, unknown 22.3
1942 Male, age 51, unknown 19.3
2410 Female, age 72, unknown 18.9
2021 Male, age 53, unknown 18.8
1915 Female, age 42, unknown 17.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.4
Samples: 139

Max nTPM: 44.4
Min nTPM: 2.7
Std nTPM: 7.5
Median nTPM: 20.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 44.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 42.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 40.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 39.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 37.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 37.5
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 35.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 34.9
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 33.1
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 32.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 30.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.1
FF:10158-103A5 76 years, female 31.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.7
Samples: 4

Max nTPM: 17.0
Min nTPM: 9.0
Sample A Female 17.0
Sample B Female 9.0
Sample C Male 11.4
Sample D Male 13.4
Midbrain
nTPM: 30.6
Samples: 4

Max nTPM: 51.9
Min nTPM: 15.0
Sample A Female 23.0
Sample B Female 15.0
Sample C Male 51.9
Sample D Male 32.4
Periaqueductal gray
nTPM: 13.4
Samples: 3

Max nTPM: 15.8
Min nTPM: 10.9
Sample B Female 15.8
Sample C Male 13.4
Sample D Male 10.9
Superior colliculi
nTPM: 26.0
Samples: 4

Max nTPM: 33.8
Min nTPM: 20.0
Sample A Female 33.8
Sample B Female 20.0
Sample C Male 22.8
Sample D Male 27.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 11.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 11.1
Samples: 4

Max nTPM: 12.9
Min nTPM: 9.9
Sample A Male 12.9
Sample B Male 10.8
Sample C Female 10.6
Sample D Female 9.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
71656884 Antisense, RP_050927_04_E03, Mouse strain C57BL/6J (56 days, male) 4.2
74357578 Antisense, RP_050927_04_E03, Mouse strain C57BL/6J (56 days, male) 3.0

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