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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:329.2 nTPM
HPA Brain:183.2 nTPM
GTEx:329.2 nTPM
FANTOM5:205.1 Scaled Tags Per Million
Pig:49.5 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

183.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 143.5
2816 Male, age 47, midline 174.3
1981 Female, age 72, midline 155.5
2194 Female, age 79, both hemispheres 152.2
2048 Male, age 55, midline 118.7
2565 Male, age 75, midline 117.0
Cervical spinal cord, dorsal horn
nTPM: 149.4
2296 Male, age 66, both hemispheres 305.4
2173 Female, age 72, unknown 221.2
2069 Male, age 47, both hemispheres 131.0
1877 Male, age 55, unknown 109.2
2721 Male, age 90, both hemispheres 76.3
2297 Male, age 75, both hemispheres 53.5
Cervical spinal cord, ventral horn
nTPM: 183.2
2480 Male, age 75, both hemispheres 205.5
2820 Female, age 79, both hemispheres 205.5
2068 Male, age 55, unknown 182.7
2098 Female, age 72, unknown 177.2
2295 Male, age 66, both hemispheres 165.0
2809 Male, age 90, both hemispheres 163.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

329.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 329.2
Samples: 159

Max nTPM: 738.0
Min nTPM: 54.8
Std nTPM: 141.4
Median nTPM: 298.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 738.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 725.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 695.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 676.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 668.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 656.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 651.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 646.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 601.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 593.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 584.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 584.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 581.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 553.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 551.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 529.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 527.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 519.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 488.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 487.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 480.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 480.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 477.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 473.0
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 468.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 458.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 449.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 444.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 442.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 439.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 439.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 432.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 426.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 426.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 422.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 420.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 417.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 417.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 413.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 413.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 407.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 404.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 400.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 395.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 392.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 391.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 390.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 388.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 388.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 387.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 386.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 383.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 375.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 375.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 373.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 367.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 366.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 365.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 364.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 360.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 352.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 349.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 347.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 344.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 342.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 340.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 334.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 329.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 324.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 322.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 317.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 315.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 314.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 314.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 311.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 307.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 307.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 305.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 302.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 298.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 298.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 297.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 297.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 296.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 293.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 293.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 291.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 291.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 289.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 288.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 285.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 281.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 280.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 279.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 276.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 275.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 274.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 274.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 274.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 272.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 271.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 269.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 269.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 266.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 266.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 265.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 259.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 256.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 254.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 251.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 246.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 245.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 239.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 238.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 234.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 230.3
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 228.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 227.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 226.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 222.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 219.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 219.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 218.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 213.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 211.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 210.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 209.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 209.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 207.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 202.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 196.3
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 196.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 195.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 191.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 189.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 186.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 184.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 183.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 178.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 176.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 176.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 174.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 174.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 171.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 169.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 167.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 163.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 160.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 148.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 146.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 145.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 137.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 125.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 123.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 106.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 103.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 93.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 68.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 54.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

205.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 205.1
FF:10181-103D1 60 years, female 234.0
FF:10159-103A6 76 years, female 176.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 37.6
Samples: 4

Max nTPM: 50.4
Min nTPM: 26.9
Sample A Female 50.4
Sample B Female 31.0
Sample C Male 26.9
Sample D Male 41.9
Ventral spinal cord
nTPM: 49.5
Samples: 4

Max nTPM: 63.7
Min nTPM: 36.6
Sample A Female 63.7
Sample B Female 36.6
Sample C Male 37.1
Sample D Male 60.5

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