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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:154.4 nTPM
HPA Brain:127.3 nTPM
GTEx:154.4 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:109.1 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

127.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 110.7
1981 Female, age 72, midline 140.0
2565 Male, age 75, midline 123.8
2194 Female, age 79, both hemispheres 120.9
2816 Male, age 47, midline 93.9
2048 Male, age 55, midline 75.0
Cervical spinal cord, dorsal horn
nTPM: 127.3
2069 Male, age 47, both hemispheres 167.6
2173 Female, age 72, unknown 150.5
2296 Male, age 66, both hemispheres 148.6
2297 Male, age 75, both hemispheres 119.5
1877 Male, age 55, unknown 104.1
2721 Male, age 90, both hemispheres 73.2
Cervical spinal cord, ventral horn
nTPM: 114.6
2480 Male, age 75, both hemispheres 134.3
2098 Female, age 72, unknown 127.9
2809 Male, age 90, both hemispheres 113.5
2068 Male, age 55, unknown 113.0
2295 Male, age 66, both hemispheres 109.7
2820 Female, age 79, both hemispheres 89.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

154.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 154.4
Samples: 159

Max nTPM: 337.6
Min nTPM: 78.5
Std nTPM: 38.4
Median nTPM: 146.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 337.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 272.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 245.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 237.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 233.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 231.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 231.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 230.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 221.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 220.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 215.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 214.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 211.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 208.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 207.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 207.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 203.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 199.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 194.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 193.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 193.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 191.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 191.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 190.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 190.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 189.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 189.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 189.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 188.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 188.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 187.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 186.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 186.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 185.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 184.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 182.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 181.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 175.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 175.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 175.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 174.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 174.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 173.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 172.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 172.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 172.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 172.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 171.7
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 170.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 169.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 169.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 167.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 167.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 166.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 166.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 165.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 165.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 164.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 162.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 160.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 159.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 158.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 158.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 158.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 157.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 157.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 156.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 155.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 155.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 154.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 154.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 153.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 152.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 152.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 150.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 149.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 149.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 147.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 146.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 146.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 146.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 146.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 145.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 145.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 144.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 144.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 144.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 142.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 142.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 141.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 141.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 141.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 140.7
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 140.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 139.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 139.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 139.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 139.7
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 138.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 138.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 137.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 137.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 137.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 137.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 135.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 134.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 134.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 132.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 132.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 131.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 131.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 131.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 130.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 129.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 128.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 127.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 127.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 127.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 127.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 126.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 125.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 125.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 124.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 123.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 123.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 123.0
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 122.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 121.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 119.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 119.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 118.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 118.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 117.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 117.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 117.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 117.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 117.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 117.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 115.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 114.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 114.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 114.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 112.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 111.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 110.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 110.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 110.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 109.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 108.2
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 107.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 107.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 105.5
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 99.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 99.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 98.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 97.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 95.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 89.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 78.5
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 43.7
FF:10181-103D1 60 years, female 46.9
FF:10159-103A6 76 years, female 40.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 91.8
Samples: 4

Max nTPM: 102.3
Min nTPM: 79.8
Sample A Female 93.8
Sample B Female 79.8
Sample C Male 102.3
Sample D Male 91.1
Ventral spinal cord
nTPM: 109.1
Samples: 4

Max nTPM: 115.8
Min nTPM: 103.8
Sample A Female 103.8
Sample B Female 115.8
Sample C Male 111.5
Sample D Male 105.2

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