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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:82.6 nTPM
HPA Brain:63.4 nTPM
GTEx:82.6 nTPM
FANTOM5:49.2 Scaled Tags Per Million
Pig:34.9 nTPM
Mouse:79.7 nTPM

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.4
Sample id Sample description nTPM
Amygdala
nTPM: 48.7
2517 Female, age 94, left hemisphere 56.7
2695 Female, age 67, right hemisphere 50.2
2514 Male, age 75, right hemisphere 48.0
2814 Male, age 76, right hemisphere 44.6
1987 Female, age 91, left hemisphere 43.9
Basal amygdala
nTPM: 63.4
2827 Female, age 67, right hemisphere 83.1
2685 Female, age 94, left hemisphere 67.8
2609 Male, age 75, right hemisphere 67.3
2243 Female, age 91, right hemisphere 63.7
2110 Male, age 80, left hemisphere 54.1
1955 Male, age 76, both hemispheres 44.2
Central amygdala
nTPM: 57.3
2826 Female, age 94, left hemisphere 83.8
2515 Male, age 75, right hemisphere 64.2
2239 Male, age 80, left hemisphere 55.9
1905 Male, age 76, both hemispheres 42.5
2701 Female, age 91, right hemisphere 40.4
Corticomedial amygdala
nTPM: 55.2
2535 Female, age 67, right hemisphere 67.0
2829 Male, age 80, left hemisphere 62.8
2428 Male, age 75, right hemisphere 59.1
2242 Female, age 91, right hemisphere 58.6
2429 Female, age 94, left hemisphere 46.6
2240 Male, age 76, both hemispheres 37.3
Lateral amygdala
nTPM: 62.4
2830 Female, age 67, right hemisphere 75.5
2534 Female, age 94, left hemisphere 74.8
2256 Male, age 80, left hemisphere 69.0
2516 Male, age 75, right hemisphere 57.3
2255 Female, age 91, right hemisphere 50.9
1883 Male, age 76, both hemispheres 46.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 82.6
Samples: 152

Max nTPM: 162.3
Min nTPM: 17.5
Std nTPM: 26.1
Median nTPM: 81.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 162.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 160.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 151.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 150.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 150.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 138.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 136.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 132.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 124.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 124.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 123.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 122.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 121.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 121.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 119.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 117.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 115.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 115.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 114.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 109.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 108.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 108.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 107.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 107.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 106.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 106.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 106.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 104.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 101.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 101.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 100.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 100.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 100.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 100.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 99.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 99.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 99.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 99.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 98.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 98.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 98.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 96.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 96.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 94.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 94.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 94.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 93.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 92.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 91.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 91.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 90.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 89.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 89.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 88.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 88.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 88.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 86.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 86.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 86.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 85.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 85.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 85.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 85.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 84.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 84.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 84.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 84.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 84.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 84.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 84.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 83.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 83.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 83.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 83.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 82.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 82.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 80.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 79.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 78.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 78.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 77.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 77.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 75.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 75.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 74.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 74.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 73.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 73.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 73.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 72.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 72.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 72.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 71.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 71.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 71.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 70.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 70.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 70.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 70.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 70.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 69.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 69.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 69.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 69.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 69.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 69.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 68.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 67.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 67.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 66.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 66.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 65.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 65.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 65.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 64.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 63.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 63.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 63.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 62.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 62.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 61.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 60.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 60.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 59.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 59.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 59.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 58.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 58.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 57.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 56.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 56.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 56.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 56.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 54.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 53.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 53.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 53.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 52.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 52.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 52.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 50.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 49.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 46.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 45.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 43.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 42.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 40.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 38.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 38.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 38.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 37.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 17.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

49.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 49.2
FF:10151-102I7 76 years, female 49.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.9
Pig sample Sample description nTPM
Amygdala
nTPM: 34.9
Samples: 4

Max nTPM: 40.9
Min nTPM: 29.3
Sample A Female 40.9
Sample B Female 29.6
Sample C Male 39.6
Sample D Male 29.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 79.7
Samples: 4

Max nTPM: 91.6
Min nTPM: 69.2
Sample A Male 69.2
Sample B Male 81.6
Sample C Female 91.6
Sample D Female 76.4

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