MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA Brain:33.2 nTPM
GTEx:11.9 nTPM
FANTOM5:53.4 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:33.9 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.2
1827 Male, age 72, unknown 33.9
2666 Male, age 74, left hemisphere 31.9
2828 Female, age 72, unknown 31.9
2411 Female, age 72, unknown 31.8
2586 Male, age 75, left hemisphere 31.2
2019 Male, age 18, unknown 29.9
1870 Female, age 42, unknown 29.5
1830 Male, age 51, unknown 28.1
2219 Male, age 76, both hemispheres 27.3
1833 Male, age 53, unknown 26.7
Dorsal raphe nucleus
nTPM: 29.9
2298 Female, age 72, unknown 33.1
2750 Male, age 76, both hemispheres 31.5
2016 Female, age 72, unknown 30.9
1828 Male, age 53, unknown 27.6
2047 Male, age 72, unknown 26.4
Inferior colliculus
nTPM: 29.3
2097 Female, age 72, unknown 32.8
1890 Male, age 53, unknown 29.0
2849 Male, age 72, unknown 27.7
1848 Female, age 42, unknown 27.6
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 31.2
2502 Female, age 75, unknown 33.7
1947 Male, age 18, unknown 30.4
1795 Male, age 51, unknown 29.5
Periaquaductal grey, dorsal
nTPM: 31.5
1831 Male, age 72, unknown 35.8
2850 Male, age 76, both hemispheres 30.4
1840 Male, age 53, unknown 30.2
2464 Female, age 72, unknown 29.6
Periaquaductal grey, lateral
nTPM: 29.7
2053 Male, age 18, unknown 30.4
2272 Male, age 74, both hemispheres 30.1
2140 Male, age 76, both hemispheres 28.4
Pretectal area
nTPM: 33.2
1816 Male, age 51, unknown 40.1
1815 Male, age 53, unknown 37.8
2007 Male, age 72, unknown 37.1
1817 Female, age 42, unknown 35.3
1944 Female, age 72, unknown 35.2
2316 Male, age 76, right hemisphere 31.8
2224 Female, age 72, unknown 31.1
2825 Male, age 18, unknown 30.3
2273 Male, age 74, both hemispheres 29.9
2407 Male, age 75, both hemispheres 28.3
2667 Female, age 75, unknown 27.7
Red nucleus
nTPM: 29.6
2503 Female, age 72, unknown 34.2
1821 Female, age 72, unknown 32.7
2725 Female, age 75, unknown 31.8
1904 Male, age 53, unknown 31.0
2823 Male, age 76, right hemisphere 30.2
1865 Male, age 51, unknown 29.9
2785 Male, age 18, unknown 29.9
1954 Female, age 42, unknown 29.0
2227 Male, age 72, unknown 28.4
2769 Male, age 72, unknown 27.0
2584 Male, age 75, left hemisphere 26.4
2588 Male, age 74, left hemisphere 25.0
Substantia nigra
nTPM: 31.1
2583 Male, age 75, right hemisphere 35.7
2665 Male, age 74, both hemispheres 34.1
1851 Male, age 51, unknown 33.6
2590 Female, age 75, unknown 31.4
1916 Female, age 42, unknown 30.9
1889 Female, age 72, unknown 30.0
1941 Male, age 53, unknown 29.8
2409 Female, age 72, unknown 29.4
2699 Male, age 18, unknown 28.3
2241 Male, age 72, unknown 27.2
Superior colliculus
nTPM: 31.3
2261 Male, age 18, unknown 36.7
1796 Male, age 53, unknown 33.4
1995 Male, age 72, unknown 33.3
2087 Female, age 72, unknown 33.2
1913 Female, age 42, unknown 33.0
2668 Female, age 75, unknown 31.3
2587 Male, age 74, left hemisphere 28.9
2664 Male, age 75, both hemispheres 28.7
1839 Male, age 51, unknown 28.1
1895 Male, age 76, right hemisphere 26.4
Ventral tegmental area
nTPM: 30.9
2410 Female, age 72, unknown 34.7
2218 Male, age 76, both hemispheres 31.8
2021 Male, age 53, unknown 31.4
2223 Female, age 72, unknown 29.3
1915 Female, age 42, unknown 29.2
1942 Male, age 51, unknown 28.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.9
Samples: 139

Max nTPM: 23.0
Min nTPM: 6.4
Std nTPM: 2.9
Median nTPM: 11.7
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 23.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 21.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 19.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 18.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 17.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 17.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 17.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 16.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 16.5
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 16.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 16.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 53.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.4
FF:10158-103A5 76 years, female 53.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.4
Samples: 4

Max nTPM: 28.3
Min nTPM: 19.8
Sample A Female 28.3
Sample B Female 23.5
Sample C Male 22.0
Sample D Male 19.8
Midbrain
nTPM: 27.1
Samples: 4

Max nTPM: 28.5
Min nTPM: 25.0
Sample A Female 27.7
Sample B Female 25.0
Sample C Male 27.0
Sample D Male 28.5
Periaqueductal gray
nTPM: 23.1
Samples: 3

Max nTPM: 25.3
Min nTPM: 21.9
Sample B Female 21.9
Sample C Male 25.3
Sample D Male 22.1
Superior colliculi
nTPM: 24.9
Samples: 4

Max nTPM: 29.6
Min nTPM: 22.7
Sample A Female 29.6
Sample B Female 24.2
Sample C Male 22.9
Sample D Male 22.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 33.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 33.9
Samples: 4

Max nTPM: 34.3
Min nTPM: 33.1
Sample A Male 34.1
Sample B Male 34.2
Sample C Female 34.3
Sample D Female 33.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
81600582 Antisense, RP_081216_02_D03, Mouse strain C57BL/6J (56 days, male) 1.0
393249 Antisense, RP_040804_02_H08, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org