MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.4 nTPM
HPA Brain:65.9 nTPM
GTEx:55.4 nTPM
FANTOM5:31.5 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:60.6 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 65.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 56.8
2586 Male, age 75, left hemisphere 79.3
2019 Male, age 18, unknown 60.9
2411 Female, age 72, unknown 59.1
2666 Male, age 74, left hemisphere 56.0
1827 Male, age 72, unknown 55.9
1833 Male, age 53, unknown 54.6
2828 Female, age 72, unknown 53.8
2219 Male, age 76, both hemispheres 50.2
1830 Male, age 51, unknown 49.6
1870 Female, age 42, unknown 48.4
Dorsal raphe nucleus
nTPM: 57.1
1828 Male, age 53, unknown 64.2
2047 Male, age 72, unknown 61.0
2016 Female, age 72, unknown 56.7
2298 Female, age 72, unknown 51.9
2750 Male, age 76, both hemispheres 51.4
Inferior colliculus
nTPM: 54.8
1890 Male, age 53, unknown 59.9
2097 Female, age 72, unknown 58.2
1848 Female, age 42, unknown 52.7
2849 Male, age 72, unknown 48.6
Median raphe nucleus
nTPM: 52.2
2220 Male, age 76, midline 52.2
Periaquaductal grey, anterior
nTPM: 55.9
1947 Male, age 18, unknown 58.3
2502 Female, age 75, unknown 57.5
1795 Male, age 51, unknown 52.0
Periaquaductal grey, dorsal
nTPM: 51.8
1840 Male, age 53, unknown 56.0
1831 Male, age 72, unknown 54.6
2464 Female, age 72, unknown 49.7
2850 Male, age 76, both hemispheres 46.8
Periaquaductal grey, lateral
nTPM: 49.4
2140 Male, age 76, both hemispheres 51.2
2053 Male, age 18, unknown 49.6
2272 Male, age 74, both hemispheres 47.5
Pretectal area
nTPM: 55.2
2007 Male, age 72, unknown 63.8
1944 Female, age 72, unknown 63.3
1817 Female, age 42, unknown 62.0
1816 Male, age 51, unknown 60.7
1815 Male, age 53, unknown 58.5
2667 Female, age 75, unknown 53.3
2407 Male, age 75, both hemispheres 52.1
2224 Female, age 72, unknown 51.2
2825 Male, age 18, unknown 50.3
2273 Male, age 74, both hemispheres 49.2
2316 Male, age 76, right hemisphere 42.9
Red nucleus
nTPM: 52.8
2588 Male, age 74, left hemisphere 63.9
1821 Female, age 72, unknown 59.1
2584 Male, age 75, left hemisphere 57.9
2785 Male, age 18, unknown 56.8
2769 Male, age 72, unknown 53.1
2725 Female, age 75, unknown 50.5
1865 Male, age 51, unknown 50.1
2503 Female, age 72, unknown 49.5
1954 Female, age 42, unknown 49.0
1904 Male, age 53, unknown 48.2
2227 Male, age 72, unknown 48.2
2823 Male, age 76, right hemisphere 47.6
Substantia nigra
nTPM: 65.9
1916 Female, age 42, unknown 89.5
1851 Male, age 51, unknown 76.7
2665 Male, age 74, both hemispheres 72.8
2241 Male, age 72, unknown 69.6
2699 Male, age 18, unknown 63.6
2583 Male, age 75, right hemisphere 63.3
1889 Female, age 72, unknown 62.0
2590 Female, age 75, unknown 56.6
1941 Male, age 53, unknown 56.1
2409 Female, age 72, unknown 48.7
Superior colliculus
nTPM: 53.2
2664 Male, age 75, both hemispheres 65.8
2668 Female, age 75, unknown 63.0
1796 Male, age 53, unknown 56.5
1839 Male, age 51, unknown 56.3
2087 Female, age 72, unknown 54.0
1895 Male, age 76, right hemisphere 51.0
2587 Male, age 74, left hemisphere 50.0
2261 Male, age 18, unknown 48.1
1995 Male, age 72, unknown 45.5
1913 Female, age 42, unknown 42.0
Ventral tegmental area
nTPM: 58.5
2410 Female, age 72, unknown 70.9
1915 Female, age 42, unknown 69.3
2218 Male, age 76, both hemispheres 58.2
1942 Male, age 51, unknown 53.1
2223 Female, age 72, unknown 50.6
2021 Male, age 53, unknown 49.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 55.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 55.4
Samples: 139

Max nTPM: 101.6
Min nTPM: 34.8
Std nTPM: 10.5
Median nTPM: 54.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 101.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 85.2
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 80.0
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 79.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 76.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 76.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 75.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 74.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 72.5
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 69.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 69.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 31.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.5
FF:10158-103A5 76 years, female 31.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.7
Samples: 4

Max nTPM: 21.5
Min nTPM: 17.6
Sample A Female 19.4
Sample B Female 17.6
Sample C Male 20.4
Sample D Male 21.5
Midbrain
nTPM: 21.6
Samples: 4

Max nTPM: 24.1
Min nTPM: 18.0
Sample A Female 21.8
Sample B Female 18.0
Sample C Male 24.1
Sample D Male 22.5
Periaqueductal gray
nTPM: 18.5
Samples: 3

Max nTPM: 18.7
Min nTPM: 18.4
Sample B Female 18.5
Sample C Male 18.4
Sample D Male 18.7
Superior colliculi
nTPM: 21.5
Samples: 4

Max nTPM: 25.1
Min nTPM: 18.8
Sample A Female 20.1
Sample B Female 18.8
Sample C Male 25.1
Sample D Male 22.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 60.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 60.6
Samples: 4

Max nTPM: 62.5
Min nTPM: 58.5
Sample A Male 60.7
Sample B Male 62.5
Sample C Female 58.5
Sample D Female 60.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68193029 Antisense, RP_040825_01_F02, Mouse strain C57BL/6J (56 days, male) 2.2

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