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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:109.1 nTPM
HPA Brain:53.2 nTPM
GTEx:109.1 nTPM
FANTOM5:64.4 Scaled Tags Per Million
Pig:16.2 nTPM
Mouse:101.5 nTPM
Allen mouse:0.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.2
Sample id Sample description nTPM
Amygdala
nTPM: 52.7
2695 Female, age 67, right hemisphere 61.5
1987 Female, age 91, left hemisphere 52.0
2514 Male, age 75, right hemisphere 51.2
2814 Male, age 76, right hemisphere 49.7
2517 Female, age 94, left hemisphere 48.9
Basal amygdala
nTPM: 45.2
2609 Male, age 75, right hemisphere 63.4
1955 Male, age 76, both hemispheres 47.8
2827 Female, age 67, right hemisphere 44.4
2685 Female, age 94, left hemisphere 40.0
2110 Male, age 80, left hemisphere 39.0
2243 Female, age 91, right hemisphere 36.4
Central amygdala
nTPM: 53.2
2826 Female, age 94, left hemisphere 76.7
2515 Male, age 75, right hemisphere 53.6
1905 Male, age 76, both hemispheres 52.1
2701 Female, age 91, right hemisphere 42.5
2239 Male, age 80, left hemisphere 41.0
Corticomedial amygdala
nTPM: 37.6
2428 Male, age 75, right hemisphere 53.8
2535 Female, age 67, right hemisphere 38.5
2829 Male, age 80, left hemisphere 37.8
2429 Female, age 94, left hemisphere 35.3
2242 Female, age 91, right hemisphere 31.1
2240 Male, age 76, both hemispheres 29.2
Lateral amygdala
nTPM: 50.8
2516 Male, age 75, right hemisphere 60.5
2830 Female, age 67, right hemisphere 57.5
1883 Male, age 76, both hemispheres 52.5
2534 Female, age 94, left hemisphere 52.0
2256 Male, age 80, left hemisphere 46.8
2255 Female, age 91, right hemisphere 35.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 109.1
Samples: 152

Max nTPM: 283.6
Min nTPM: 34.3
Std nTPM: 43.9
Median nTPM: 100.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 283.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 271.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 255.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 239.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 228.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 223.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 213.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 195.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 187.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 182.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 181.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 177.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 175.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 173.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 166.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 162.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 162.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 160.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 159.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 159.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 157.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 153.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 148.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 146.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 145.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 145.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 145.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 141.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 135.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 135.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 134.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 132.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 131.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 130.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 129.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 127.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 125.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 124.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 123.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 122.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 121.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 120.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 120.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 119.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 118.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 118.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 117.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 117.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 116.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 115.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 115.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 114.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 114.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 111.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 110.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 109.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 108.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 108.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 108.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 107.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 107.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 106.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 105.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 104.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 104.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 104.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 104.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 104.2
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 104.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 103.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 102.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 101.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 101.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 101.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 101.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 100.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 99.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 98.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 98.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 97.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 97.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 97.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 97.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 96.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 95.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 95.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 95.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 94.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 94.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 94.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 94.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 93.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 92.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 90.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 90.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 89.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 89.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 87.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 85.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 85.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 85.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 84.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 84.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 84.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 83.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 82.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 81.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 81.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 80.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 80.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 80.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 79.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 78.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 78.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 78.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 78.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 78.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 77.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 75.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 75.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 75.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 75.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 73.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 73.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 72.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 72.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 72.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 72.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 70.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 70.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 69.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 69.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 68.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 68.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 67.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 67.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 66.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 66.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 65.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 65.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 65.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 63.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 63.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 60.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 60.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 59.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 59.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 57.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 51.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 49.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 49.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 34.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

64.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 64.4
FF:10151-102I7 76 years, female 64.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.2
Pig sample Sample description nTPM
Amygdala
nTPM: 16.2
Samples: 4

Max nTPM: 19.0
Min nTPM: 12.3
Sample A Female 19.0
Sample B Female 18.1
Sample C Male 15.3
Sample D Male 12.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

101.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 101.5
Samples: 4

Max nTPM: 106.0
Min nTPM: 97.6
Sample A Male 98.1
Sample B Male 106.0
Sample C Female 104.2
Sample D Female 97.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.0
71763972 Antisense, RP_050921_02_H09, Mouse strain C57BL/6J (56 days, male) 0.0
74272919 Antisense, RP_050921_02_H09, Mouse strain C57BL/6J (56 days, male) 0.0

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