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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:32.0 nTPM
HPA Brain:26.4 nTPM
GTEx:32.0 nTPM
FANTOM5:70.6 Scaled Tags Per Million
Pig:13.6 nTPM
Mouse:15.3 nTPM
Allen mouse:0.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

26.4
Sample id Sample description nTPM
Amygdala
nTPM: 26.4
2514 Male, age 75, right hemisphere 29.7
1987 Female, age 91, left hemisphere 29.5
2695 Female, age 67, right hemisphere 26.6
2814 Male, age 76, right hemisphere 23.3
2517 Female, age 94, left hemisphere 22.9
Basal amygdala
nTPM: 23.2
2243 Female, age 91, right hemisphere 26.8
2609 Male, age 75, right hemisphere 26.8
2110 Male, age 80, left hemisphere 24.5
1955 Male, age 76, both hemispheres 24.3
2685 Female, age 94, left hemisphere 21.6
2827 Female, age 67, right hemisphere 15.4
Central amygdala
nTPM: 23.9
2239 Male, age 80, left hemisphere 27.0
2515 Male, age 75, right hemisphere 24.8
2701 Female, age 91, right hemisphere 23.6
1905 Male, age 76, both hemispheres 22.4
2826 Female, age 94, left hemisphere 21.8
Corticomedial amygdala
nTPM: 25.2
2428 Male, age 75, right hemisphere 30.4
2242 Female, age 91, right hemisphere 29.2
2829 Male, age 80, left hemisphere 29.1
2429 Female, age 94, left hemisphere 24.9
2240 Male, age 76, both hemispheres 23.1
2535 Female, age 67, right hemisphere 14.2
Lateral amygdala
nTPM: 21.8
2516 Male, age 75, right hemisphere 26.7
2255 Female, age 91, right hemisphere 23.5
2534 Female, age 94, left hemisphere 22.6
1883 Male, age 76, both hemispheres 22.0
2256 Male, age 80, left hemisphere 21.4
2830 Female, age 67, right hemisphere 14.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 32.0
Samples: 152

Max nTPM: 55.1
Min nTPM: 19.3
Std nTPM: 7.3
Median nTPM: 31.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 55.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 53.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 50.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 48.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 47.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 47.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 47.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 46.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 45.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 44.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 43.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 43.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 43.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 43.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 43.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 43.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 42.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 41.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 41.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 41.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 41.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 40.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 40.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 40.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 40.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 39.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 39.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 38.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 38.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 38.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 37.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 37.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 37.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 37.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 36.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 36.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 36.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 36.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 35.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 35.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 35.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 35.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 35.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 35.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 35.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 34.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 34.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 34.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 34.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 34.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 34.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 33.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 33.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 33.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 33.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 33.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 32.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 32.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 32.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 32.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 32.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 31.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 31.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 31.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 31.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 31.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 31.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 31.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 31.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 31.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 31.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 31.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 31.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 31.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 31.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 31.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 31.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 30.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 30.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 30.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 30.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 30.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 30.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 30.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 30.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 29.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 29.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 29.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 29.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 29.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 29.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 29.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 29.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 28.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 28.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 28.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 28.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 28.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 28.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 28.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 28.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 28.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 28.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 28.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 27.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 27.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 27.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 27.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 27.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 27.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 27.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 27.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 27.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 26.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 26.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 26.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 26.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 25.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 25.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 25.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 25.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 25.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 25.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 25.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 25.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 24.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 24.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 24.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 24.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 24.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 24.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 24.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 23.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 23.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 23.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 23.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 23.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 23.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 23.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 22.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 22.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 22.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 21.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 21.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 21.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 21.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 21.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 21.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 21.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 21.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 21.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 19.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

70.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 70.6
FF:10151-102I7 76 years, female 70.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.6
Pig sample Sample description nTPM
Amygdala
nTPM: 13.6
Samples: 4

Max nTPM: 15.0
Min nTPM: 12.7
Sample A Female 12.7
Sample B Female 15.0
Sample C Male 13.8
Sample D Male 13.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 15.3
Samples: 4

Max nTPM: 16.7
Min nTPM: 12.6
Sample A Male 16.5
Sample B Male 16.7
Sample C Female 12.6
Sample D Female 15.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.4
70812768 Antisense, RP_050712_02_E10, Mouse strain C57BL/6J (56 days, male) 0.8
68191360 Antisense, RP_041129_01_A07, Mouse strain C57BL/6J (56 days, male) 0.0

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