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SLC8A2
HPA
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  • SLC8A2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SLC8A2
Synonyms KIAA1087, NCX2
Gene descriptioni

Full gene name according to HGNC.

Solute carrier family 8 member A2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Plasma proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 19
Cytoband q13.32
Chromosome location (bp) 47428017 - 47471893
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

4
Ensembl ENSG00000118160 (version 109)
Entrez gene 6543
HGNC HGNC:11069
UniProt Q9UPR5 (UniProt - Evidence at transcript level)
neXtProt NX_Q9UPR5
GeneCards SLC8A2
Antibodypedia SLC8A2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Mediates the electrogenic exchange of Ca(2+) against Na(+) ions across the cell membrane, and thereby contributes to the regulation of cytoplasmic Ca(2+) levels and Ca(2+)-dependent cellular processes. Contributes to cellular Ca(2+) homeostasis in excitable cells. Contributes to the rapid decrease of cytoplasmic Ca(2+) levels back to baseline after neuronal activation, and thereby contributes to modulate synaptic plasticity, learning and memory. Plays a role in regulating urinary Ca(2+) and Na(+) excretion.... show less
Molecular function (UniProt)i

Keywords assigned by UniProt to proteins due to their particular molecular function.

Calmodulin-binding
Biological process (UniProt)i

Keywords assigned by UniProt to proteins because they are involved in a particular biological process.

Antiport, Calcium transport, Ion transport, Sodium transport, Transport
Ligand (UniProt)i

Keywords assigned by UniProt to proteins because they bind, are associated with, or whose activity is dependent of some molecule.

Calcium, Metal-binding, Sodium
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable calcium:cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration and calcium:sodium antiporter activity. Predicted to be involved in several processes, including inorganic cation transmembrane transport; learning or memory; and regulation of short-term neuronal synaptic plasticity. Predicted to act upstream of or within several processes, including modulation of chemical synaptic transmission; regulation of action potential firing pattern; and response to ischemia. Part of presynapse. Biomarker of Alzheimer's disease. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SLC8A2-201
ENSP00000236877
ENST00000236877
Q9UPR5
[Direct mapping] Sodium/calcium exchanger 2
Show all
Metabolic proteins
Transporters
   Electrochemical Potential-driven transporters
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   >9TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0002931 [response to ischemia]
GO:0005432 [calcium:sodium antiporter activity]
GO:0005516 [calmodulin binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006816 [calcium ion transport]
GO:0006874 [cellular calcium ion homeostasis]
GO:0007154 [cell communication]
GO:0007611 [learning or memory]
GO:0007612 [learning]
GO:0007613 [memory]
GO:0010468 [regulation of gene expression]
GO:0014069 [postsynaptic density]
GO:0015081 [sodium ion transmembrane transporter activity]
GO:0015085 [calcium ion transmembrane transporter activity]
GO:0015297 [antiporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0016323 [basolateral plasma membrane]
GO:0030001 [metal ion transport]
GO:0030054 [cell junction]
GO:0030424 [axon]
GO:0030425 [dendrite]
GO:0035725 [sodium ion transmembrane transport]
GO:0042383 [sarcolemma]
GO:0042995 [cell projection]
GO:0043025 [neuronal cell body]
GO:0043197 [dendritic spine]
GO:0043204 [perikaryon]
GO:0043679 [axon terminus]
GO:0045202 [synapse]
GO:0046872 [metal ion binding]
GO:0048172 [regulation of short-term neuronal synaptic plasticity]
GO:0050808 [synapse organization]
GO:0050890 [cognition]
GO:0051480 [regulation of cytosolic calcium ion concentration]
GO:0055085 [transmembrane transport]
GO:0060291 [long-term synaptic potentiation]
GO:0070050 [neuron cellular homeostasis]
GO:0070588 [calcium ion transmembrane transport]
GO:0071902 [positive regulation of protein serine/threonine kinase activity]
GO:0098703 [calcium ion import across plasma membrane]
GO:0098793 [presynapse]
GO:0098794 [postsynapse]
GO:0098815 [modulation of excitatory postsynaptic potential]
GO:0099566 [regulation of postsynaptic cytosolic calcium ion concentration]
GO:0099608 [regulation of action potential firing pattern]
GO:0106056 [regulation of calcineurin-mediated signaling]
GO:0150104 [transport across blood-brain barrier]
GO:1903779 [regulation of cardiac conduction]
GO:1905060 [calcium:cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration]
GO:1990034 [calcium ion export across plasma membrane]
Show all
921 aa
100.4 kDa
Yes >9
SLC8A2-203
ENSP00000437536
ENST00000542837
F5H6L7
[Direct mapping] Sodium/calcium exchanger 2
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   5TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005432 [calcium:sodium antiporter activity]
GO:0005516 [calmodulin binding]
GO:0005886 [plasma membrane]
GO:0006811 [ion transport]
GO:0006814 [sodium ion transport]
GO:0006816 [calcium ion transport]
GO:0007154 [cell communication]
GO:0015297 [antiporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0030054 [cell junction]
GO:0035725 [sodium ion transmembrane transport]
GO:0046872 [metal ion binding]
GO:0055085 [transmembrane transport]
Show all
677 aa
74.4 kDa
No 5
SLC8A2-204
ENSP00000472233
ENST00000594353
M0R211
[Direct mapping] Sodium/calcium exchanger 2
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   3TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0006811 [ion transport]
GO:0006816 [calcium ion transport]
GO:0015297 [antiporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0055085 [transmembrane transport]
Show all
159 aa
17.4 kDa
No 3
SLC8A2-205
ENSP00000472208
ENST00000597014
M0R1Z4
[Direct mapping] Sodium/calcium exchanger 2
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0006811 [ion transport]
GO:0006816 [calcium ion transport]
GO:0015297 [antiporter activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0055085 [transmembrane transport]
Show all
145 aa
15.7 kDa
No 2

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