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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:677.3 nTPM
HPA Brain:241.2 nTPM
GTEx:677.3 nTPM
FANTOM5:640.0 Scaled Tags Per Million
Pig:203.1 nTPM
Mouse:892.1 nTPM
Allen mouse:11.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.2
Sample id Sample description nTPM
Amygdala
nTPM: 241.2
2695 Female, age 67, right hemisphere 302.1
2514 Male, age 75, right hemisphere 255.2
1987 Female, age 91, left hemisphere 230.2
2814 Male, age 76, right hemisphere 218.2
2517 Female, age 94, left hemisphere 200.4
Basal amygdala
nTPM: 184.8
2827 Female, age 67, right hemisphere 227.2
2609 Male, age 75, right hemisphere 205.9
2110 Male, age 80, left hemisphere 184.8
2685 Female, age 94, left hemisphere 184.8
1955 Male, age 76, both hemispheres 167.9
2243 Female, age 91, right hemisphere 138.0
Central amygdala
nTPM: 209.5
2826 Female, age 94, left hemisphere 311.4
2515 Male, age 75, right hemisphere 228.8
1905 Male, age 76, both hemispheres 190.2
2701 Female, age 91, right hemisphere 160.3
2239 Male, age 80, left hemisphere 156.9
Corticomedial amygdala
nTPM: 168.1
2428 Male, age 75, right hemisphere 184.5
2829 Male, age 80, left hemisphere 181.6
2535 Female, age 67, right hemisphere 165.9
2429 Female, age 94, left hemisphere 160.4
2242 Female, age 91, right hemisphere 159.4
2240 Male, age 76, both hemispheres 156.6
Lateral amygdala
nTPM: 218.2
2830 Female, age 67, right hemisphere 313.8
2516 Male, age 75, right hemisphere 284.0
2534 Female, age 94, left hemisphere 223.0
1883 Male, age 76, both hemispheres 176.8
2256 Male, age 80, left hemisphere 159.5
2255 Female, age 91, right hemisphere 152.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

677.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 677.3
Samples: 152

Max nTPM: 1925.0
Min nTPM: 347.7
Std nTPM: 257.2
Median nTPM: 611.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1925.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1730.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1641.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1454.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1427.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1373.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1170.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1160.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 1145.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1119.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1103.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1039.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1028.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1010.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 993.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 973.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 895.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 883.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 880.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 873.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 851.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 845.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 837.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 836.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 833.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 823.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 821.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 816.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 809.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 800.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 799.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 798.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 796.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 793.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 786.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 785.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 780.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 776.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 776.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 764.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 760.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 752.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 747.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 743.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 741.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 740.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 733.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 725.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 715.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 713.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 711.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 707.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 692.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 683.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 680.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 678.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 678.3
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 678.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 672.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 669.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 662.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 658.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 658.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 655.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 655.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 649.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 644.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 638.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 637.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 636.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 633.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 632.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 627.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 617.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 616.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 612.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 609.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 604.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 602.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 601.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 599.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 597.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 597.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 594.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 591.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 591.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 587.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 587.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 586.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 580.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 579.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 579.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 578.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 577.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 576.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 574.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 571.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 565.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 560.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 558.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 558.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 556.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 554.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 554.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 546.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 545.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 537.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 537.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 536.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 528.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 524.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 523.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 520.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 519.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 515.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 507.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 506.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 504.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 501.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 497.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 494.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 494.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 487.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 485.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 481.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 477.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 475.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 468.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 463.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 462.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 462.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 461.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 460.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 457.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 450.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 440.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 439.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 431.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 428.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 423.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 419.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 414.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 411.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 409.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 402.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 398.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 396.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 391.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 363.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 354.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 352.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 347.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

640.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 640.0
FF:10151-102I7 76 years, female 640.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.1
Pig sample Sample description nTPM
Amygdala
nTPM: 203.2
Samples: 4

Max nTPM: 257.2
Min nTPM: 114.0
Sample A Female 257.2
Sample B Female 247.2
Sample C Male 194.2
Sample D Male 114.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

892.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 892.2
Samples: 4

Max nTPM: 939.7
Min nTPM: 843.3
Sample A Male 843.3
Sample B Male 917.3
Sample C Female 939.7
Sample D Female 868.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.5
68637521 Antisense, RP_050126_01_A11, Mouse strain C57BL/6J (56 days, male) 11.5

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