MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:112.5 nTPM
HPA Brain:200.6 nTPM
GTEx:112.5 nTPM
FANTOM5:50.9 Scaled Tags Per Million
Pig:1853.2 nTPM
Mouse:17.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 200.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 29.7
2666 Male, age 74, left hemisphere 43.4
2019 Male, age 18, unknown 36.7
2219 Male, age 76, both hemispheres 35.5
1833 Male, age 53, unknown 34.0
1830 Male, age 51, unknown 33.9
2828 Female, age 72, unknown 32.1
2586 Male, age 75, left hemisphere 24.1
1827 Male, age 72, unknown 23.2
2411 Female, age 72, unknown 23.2
1870 Female, age 42, unknown 11.4
Dorsal raphe nucleus
nTPM: 46.2
2298 Female, age 72, unknown 116.2
1828 Male, age 53, unknown 32.8
2750 Male, age 76, both hemispheres 27.8
2016 Female, age 72, unknown 27.4
2047 Male, age 72, unknown 26.5
Inferior colliculus
nTPM: 58.8
1890 Male, age 53, unknown 99.4
2849 Male, age 72, unknown 85.4
2097 Female, age 72, unknown 27.7
1848 Female, age 42, unknown 22.6
Median raphe nucleus
nTPM: 24.1
2220 Male, age 76, midline 24.1
Periaquaductal grey, anterior
nTPM: 33.6
1795 Male, age 51, unknown 61.3
1947 Male, age 18, unknown 24.4
2502 Female, age 75, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 74.1
1831 Male, age 72, unknown 129.0
2464 Female, age 72, unknown 96.4
2850 Male, age 76, both hemispheres 38.0
1840 Male, age 53, unknown 32.9
Periaquaductal grey, lateral
nTPM: 200.6
2272 Male, age 74, both hemispheres 465.0
2053 Male, age 18, unknown 106.0
2140 Male, age 76, both hemispheres 30.8
Pretectal area
nTPM: 42.3
2273 Male, age 74, both hemispheres 107.4
2667 Female, age 75, unknown 74.6
1815 Male, age 53, unknown 69.7
2316 Male, age 76, right hemisphere 35.5
2224 Female, age 72, unknown 34.0
2407 Male, age 75, both hemispheres 29.9
2825 Male, age 18, unknown 29.3
1816 Male, age 51, unknown 28.2
1944 Female, age 72, unknown 25.9
2007 Male, age 72, unknown 17.0
1817 Female, age 42, unknown 13.8
Red nucleus
nTPM: 48.4
1821 Female, age 72, unknown 129.0
2588 Male, age 74, left hemisphere 115.9
2725 Female, age 75, unknown 52.7
2785 Male, age 18, unknown 48.0
1865 Male, age 51, unknown 37.6
2769 Male, age 72, unknown 36.7
2823 Male, age 76, right hemisphere 32.8
1954 Female, age 42, unknown 29.2
1904 Male, age 53, unknown 27.6
2584 Male, age 75, left hemisphere 27.2
2227 Male, age 72, unknown 25.5
2503 Female, age 72, unknown 19.0
Substantia nigra
nTPM: 30.4
2409 Female, age 72, unknown 47.9
1889 Female, age 72, unknown 37.8
2665 Male, age 74, both hemispheres 32.4
1941 Male, age 53, unknown 29.4
2699 Male, age 18, unknown 29.4
1851 Male, age 51, unknown 28.7
2241 Male, age 72, unknown 28.3
2583 Male, age 75, right hemisphere 25.9
1916 Female, age 42, unknown 24.4
2590 Female, age 75, unknown 19.7
Superior colliculus
nTPM: 61.4
2587 Male, age 74, left hemisphere 263.2
1995 Male, age 72, unknown 78.2
2261 Male, age 18, unknown 44.9
2668 Female, age 75, unknown 44.6
2087 Female, age 72, unknown 36.1
1895 Male, age 76, right hemisphere 34.1
1839 Male, age 51, unknown 30.9
1796 Male, age 53, unknown 27.5
2664 Male, age 75, both hemispheres 27.3
1913 Female, age 42, unknown 26.9
Ventral tegmental area
nTPM: 35.8
1915 Female, age 42, unknown 54.6
2223 Female, age 72, unknown 50.5
2021 Male, age 53, unknown 35.7
2218 Male, age 76, both hemispheres 31.5
1942 Male, age 51, unknown 25.8
2410 Female, age 72, unknown 16.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 112.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 112.5
Samples: 139

Max nTPM: 1436.4
Min nTPM: 0.2
Std nTPM: 243.6
Median nTPM: 22.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 1436.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 1166.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1061.4
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 1028.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 805.4
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 798.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 774.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 703.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 637.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 616.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 511.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 50.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 50.9
FF:10158-103A5 76 years, female 50.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1853.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 243.4
Samples: 4

Max nTPM: 474.7
Min nTPM: 131.3
Sample A Female 215.5
Sample B Female 474.7
Sample C Male 131.3
Sample D Male 152.2
Midbrain
nTPM: 144.1
Samples: 4

Max nTPM: 318.7
Min nTPM: 48.9
Sample A Female 116.6
Sample B Female 318.7
Sample C Male 92.1
Sample D Male 48.9
Periaqueductal gray
nTPM: 96.9
Samples: 3

Max nTPM: 177.8
Min nTPM: 9.0
Sample B Female 177.8
Sample C Male 9.0
Sample D Male 103.9
Superior colliculi
nTPM: 1853.2
Samples: 4

Max nTPM: 7220.8
Min nTPM: 15.0
Sample A Female 85.3
Sample B Female 7220.8
Sample C Male 15.0
Sample D Male 91.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 50.5
Min nTPM: 1.7
Sample A Male 50.5
Sample B Male 1.7
Sample C Female 12.5
Sample D Female 6.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68632172 Antisense, RP_050125_01_G11, Mouse strain C57BL/6J (56 days, male) 0.1

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