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SPCS2
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SPCS2
PROTEIN SUMMARY GENE INFORMATION RNA DATA ANTIBODY DATA
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

SPCS2
Synonyms KIAA0102
Gene descriptioni

Full gene name according to HGNC.

Signal peptidase complex subunit 2
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Metabolic proteins
Plasma proteins
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.

  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane, Intracellular
Protein evidence Evidence at protein level (all genes)
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 11
Cytoband q13.4
Chromosome location (bp) 74949261 - 74979033
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

5
Ensembl ENSG00000118363 (version 109)
Entrez gene 9789
HGNC HGNC:28962
UniProt Q15005 (UniProt - Evidence at protein level)
neXtProt NX_Q15005
GeneCards SPCS2
Antibodypedia SPCS2 antibodies


PROTEIN FUNCTION
Protein function (UniProt)i

Useful information about the protein provided by UniProt.

Component of the signal peptidase complex (SPC) which catalyzes the cleavage of N-terminal signal sequences from nascent proteins as they are translocated into the lumen of the endoplasmic reticulum 1. Enhances the enzymatic activity of SPC and facilitates the interactions between different components of the translocation site (By similarity).... show less
Gene summary (Entrez)i

Useful information about the gene from Entrez

Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of signal peptidase complex. [provided by Alliance of Genome Resources, Apr 2022]... show less
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.
Splice variant SwissProt TrEMBL Protein class Gene ontology Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
SPCS2-201
ENSP00000263672
ENST00000263672
Q15005
[Direct mapping] Signal peptidase complex subunit 2
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Plasma proteins
Mapped to neXtProt
   neXtProt - Evidence at protein level
Protein evidence (Kim et al 2014)
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005515 [protein binding]
GO:0005783 [endoplasmic reticulum]
GO:0005787 [signal peptidase complex]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006465 [signal peptide processing]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
GO:0045047 [protein targeting to ER]
Show all
226 aa
25 kDa
No 2
SPCS2-202
ENSP00000434248
ENST00000526361
E9PRB9
[Direct mapping] Signal peptidase complex subunit 2
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005787 [signal peptidase complex]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006465 [signal peptide processing]
GO:0008233 [peptidase activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
87 aa
10.2 kDa
No 0
SPCS2-203
ENSP00000434706
ENST00000526883
H0YE04
[Direct mapping] Signal peptidase complex subunit 2
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005787 [signal peptidase complex]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006465 [signal peptide processing]
GO:0008233 [peptidase activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
166 aa
18.7 kDa
No 2
SPCS2-207
ENSP00000433439
ENST00000530257
E9PL01
[Direct mapping] Signal peptidase complex subunit 2
Show all
Metabolic proteins
Predicted intracellular proteins
   Intracellular proteins predicted by MDM and MDSEC
Protein evidence (Ezkurdia et al 2014)
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005787 [signal peptidase complex]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006465 [signal peptide processing]
GO:0008233 [peptidase activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
157 aa
17 kDa
No 0
SPCS2-208
ENSP00000436759
ENST00000532972
E9PI68
[Direct mapping] Signal peptidase complex subunit 2
Show all
Metabolic proteins
Predicted membrane proteins
   Prediction method-based
   Membrane proteins predicted by MDM
   MEMSAT3 predicted membrane proteins
   MEMSAT-SVM predicted membrane proteins
   Phobius predicted membrane proteins
   SCAMPI predicted membrane proteins
   SPOCTOPUS predicted membrane proteins
   THUMBUP predicted membrane proteins
   TMHMM predicted membrane proteins
   # TM segments-based
   2TM proteins predicted by MDM
Protein evidence (Ezkurdia et al 2014)
   DeepTMHMM predicted membrane proteins
Show all
GO:0005783 [endoplasmic reticulum]
GO:0005787 [signal peptidase complex]
GO:0005789 [endoplasmic reticulum membrane]
GO:0006465 [signal peptide processing]
GO:0008233 [peptidase activity]
GO:0016020 [membrane]
GO:0016021 [integral component of membrane]
Show all
257 aa
28.5 kDa
No 2

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