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ELOVL4
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:171.3 nTPM
GTEx:171.3 nTPM
FANTOM5:80.8 Scaled Tags Per Million
Pig:109.2 nTPM
Mouse:521.4 nTPM

RETINA - Annotated protein expression
Pending normal tissue analysis

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 171.3
Samples: 105

Max nTPM: 331.7
Min nTPM: 70.3
Std nTPM: 53.0
Median nTPM:
490_1 67 years, female 331.7
415_1 77 years, female 306.5
162_1 79 years, female 296.3
32_1 67 years, male 288.9
126_1 63 years, male 283.9
149_1 88 years, male 275.1
466_1 57 years, female 269.3
43_1 64 years, female 252.8
491_1 89 years, female 246.1
6_1 73 years, female 242.7
81_1 67 years, male 241.7
142_1 61 years, female 241.3
495_1 57 years, female 241.1
414_1 84 years, female 236.3
468_1 89 years, male 234.4
217_1 76 years, male 231.5
153_1 70 years, female 230.7
117_1 61 years, male 225.4
9_1 66 years, female 219.0
266_1 85 years, male 216.2
2_1 77 years, female 212.6
315_1 62 years, female 211.3
89_1 63 years, male 206.3
137_1 83 years, male 205.6
526_1 61 years, male 204.9
18_1 88 years, male 202.9
139_1 64 years, female 201.9
115_1 83 years, male 199.6
35_1 74 years, female 199.4
499_1 55 years, female 197.1
389_1 86 years, female 193.9
246_1 77 years, male 193.4
352_1 62 years, male 192.6
42_1 85 years, male 191.3
324_1 76 years, male 187.6
265_1 87 years, male 187.3
307_1 66 years, female 186.5
251_1 78 years, male 186.2
99_1 64 years, male 183.7
109_1 81 years, female 182.7
145_1 84 years, male 181.7
347_1 72 years, male 176.5
229_1 69 years, female 176.4
120_1 70 years, female 176.1
119_1 70 years, female 175.5
518_1 75 years, female 174.3
17_1 71 years, male 172.9
413_1 59 years, female 171.8
311_1 78 years, male 171.3
254_1 77 years, female 170.9
503_1 68 years, male 169.0
517_1 88 years, male 163.3
447_1 81 years, male 162.6
355_1 70 years, female 159.1
316_1 62 years, male 158.9
425_1 59 years, female 158.8
348_1 84 years, male 157.4
313_1 79 years, female 156.0
292_1 71 years, male 155.0
291_1 76 years, male 154.2
335_1 73 years, female 153.9
480_1 63 years, male 152.5
396_1 62 years, male 152.2
237_1 82 years, male 151.7
354_1 81 years, female 151.0
375_1 74 years, female 150.3
243_1 75 years, male 149.9
286_1 68 years, female 148.6
4_1 88 years, female 148.5
189_1 76 years, male 147.7
405_1 91 years, male 147.6
350_1 84 years, female 142.0
386_1 76 years, male 141.2
288_1 66 years, female 139.2
172_1 72 years, female 136.6
404_1 82 years, female 136.5
377_1 82 years, female 136.0
293_1 68 years, female 133.1
322_1 76 years, male 130.8
321_1 62 years, female 130.4
319_1 81 years, male 129.9
394_1 75 years, female 126.8
349_1 83 years, male 123.9
406_1 79 years, male 123.1
379_1 60 years, male 119.6
353_1 82 years, female 119.4
356_1 87 years, female 118.1
314_1 67 years, male 117.6
318_1 68 years, male 117.5
320_1 89 years, female 117.3
376_1 75 years, female 117.0
308_1 70 years, female 116.2
501_1 88 years, male 115.8
317_1 60 years, male 112.8
384_1 83 years, male 111.6
264_1 73 years, female 104.7
41_1 94 years, female 104.0
351_1 91 years, male 103.3
177_1 74 years, male 100.0
173_1 67 years, male 98.0
218_1 71 years, female 98.0
163_1 78 years, male 92.6
295_1 61 years, female 89.9
506_1 65 years, male 79.2
452_1 88 years, female 70.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 80.8
FF:10030-101E3 24-65 years, mixed 80.8

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

109.2
Pig sample Sample description nTPM
Retina
nTPM: 109.2
Samples: 4

Max nTPM: 122.8
Min nTPM: 98.7
Sample A Female 98.7
Sample B Female 122.8
Sample C Male 115.2
Sample D Male 100.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

521.4
Mouse sample Sample description nTPM
Retina
nTPM: 521.4
Samples: 4

Max nTPM: 579.6
Min nTPM: 498.2
Sample A Male 498.2
Sample B Male 502.8
Sample C Female 579.6
Sample D Female 504.8

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